Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq590 116 3e-21 seq614 109 4e-19 >seq590 Length=263001 Score = 116 bits (128), Expect = 3e-21 Identities = 378/576 (66%), Gaps = 12/576 (2%) Strand=Plus/Minus Query 29805 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG 29864 ||| || ||||||| ||| ||||||||||| || |||||||| || ||||||||||| Sbjct 236156 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 236097 Query 29865 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29924 ||||| || | | || || | | || | ||| | |||| ||| ||||| || Sbjct 236096 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 236037 Query 29925 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC 29984 || || || || |||||||| | || | |||||||||| || || || || || | Sbjct 236036 CGGGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATT 235977 Query 29985 GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 ||||||||||||||| | ||||||||| || || ||||| | ||| | | Sbjct 235976 GCTCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCT 235917 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 || ||||| || | | || || | || || || || || | | || || Sbjct 235916 CGGATTCCATGCCGTGAATAGCATCCGGCGATCGTCAGGATTTGTCTTTAGCGTTTCAAC 235857 Query 30105 G-GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTAC 30162 | | ||| | |||||||| ||| || |||| || | |||| || ||||| Sbjct 235856 GATTGCCTTG-ATTTGATCCACACCCTGTCCGTCATAGT-TGGCATCATGGTGTGTGTAG 235799 Query 30163 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30222 | || || || || | |||||| || ||||| || || || ||| ||| || ||| | Sbjct 235798 GCGGCACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGG--TCCATC-TCCTCG 235742 Query 30223 TGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 | ||| || ||| | |||| | ||| | | || |||||| ||||||| || | Sbjct 235741 TACTCTGTGAGGCCACGACTGTCAAGAAACGCGCGCGAGCCGTTGTCGTCCCATATGTGG 235682 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30339 || ||||| || | || ||||| | ||| || | | ||||||||||| ||| Sbjct 235681 ACTCCCTTGTCACTTAACTTTTTGGCATATGTTTCGCCCCGTAGAAACCACAGCAGTTCC 235622 Query 30340 TC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30374 || ||| || | |||||| |||| ||| || || Sbjct 235621 TCGCAC-ACACCGCGCCAAAAAACCCGCTTCGTTGT 235587 >seq614 Length=348591 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 29805 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG 29864 ||| || ||||||| ||| ||||||||||| || |||||||| || ||||||||||| Sbjct 130232 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 130291 Query 29865 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29924 ||||| || | | || || | | || | ||| | |||| ||| ||||| || Sbjct 130292 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 130351 Query 29925 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC 29984 || || || || |||||||| | || | |||||||||| || || || || || | Sbjct 130352 TGGGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGAAAGTTCCCCATT 130411 Query 29985 GCTCACGTAAAACTG 29999 ||||||||||||||| Sbjct 130412 GCTCACGTAAAACTG 130426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408470714103635