Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq13611 334 2e-87 seq10087 91.5 4e-14 >seq13611 Length=919 Score = 334 bits (370), Expect = 2e-87 Identities = 223/248 (90%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 21267 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 21326 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 556 Query 21327 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAAAAA 21386 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||||| Sbjct 557 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 616 Query 21387 GTCAGTGAACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCCAGCGTGAT 21446 | ||| |||||||||| ||||| ||| | ||||||||||||||| ||| ||||||||| Sbjct 617 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGAT 676 Query 21447 GCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT 21506 | || ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 677 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGAT 736 Query 21507 GCTCTTCG 21514 ||||| || Sbjct 737 GCTCTGCG 744 >seq10087 Length=869 Score = 91.5 bits (100), Expect = 4e-14 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 12821 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGACCAAATACAGATGGATTTCTAAGGG 12880 ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||| Sbjct 566 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT 507 Query 12881 CAT 12883 ||| Sbjct 506 CAT 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128243066727100