Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq10087 583 3e-162 seq13611 334 2e-87 >seq10087 Length=869 Score = 583 bits (646), Expect = 3e-162 Identities = 378/419 (90%), Gaps = 1/419 (0%) Strand=Plus/Minus Query 38032 GGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACTATCAAATATGCTGCTTGA 38091 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 GGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACTATCAAATATGCTGCTTGA 365 Query 38092 GGCTTATTCAGGTGCAGATCTAACCAAGCGACATTTTAAAGTGCTGCTTGCCATTCTGCG 38151 ||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 364 GGCTTATTCGGGCGCAGATCTGACCAAGCGACAGTTTAAAGTGCTGCTTGCCATTCTGCG 305 Query 38152 TAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT 38211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 TAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT 245 Query 38212 TACAAAGTTACCCGTCAAACGGTGCAATGAGGCCAAGTTAGAACTCGTCAGAATGAATAT 38271 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 244 TACAAAGTTACCTGTCAAACGGTGCAATGAAGCCAAGTTAGAACTCGTCAGAATGAATAT 185 Query 38272 TATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGAGTATCCC 38331 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 184 TATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGTGCATCCC 125 Query 38332 CCAAAATGAGGGAATACCCCTCAAAACAGGGGATAAAACATCCCTCAATTTGAGGGAGTG 38391 ||||| ||||||| | ||| ||||| ||||||||||||||||||| ||| |||| || Sbjct 124 TCAAAACGAGGGAAAATCCCCTAAAACGAGGGATAAAACATCCCTCAAATTGGGGGATTG 65 Query 38392 TTNNNNNNNNNNNNNNNNNGACACAAAAGACACTATT-CAAAAGAAAGAAATACAAGAT 38449 | |||||||||||||||||| ||||||||| ||| | ||||| Sbjct 64 CTATCCCTCAAAACAGGGGGACACAAAAGACACTATTACAAAAGAAAAAAAGAAAAGAT 6 Score = 95.1 bits (104), Expect = 4e-15 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 37761 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGACCAAATCCAGATGGATTTCTAAGGT 37820 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| Sbjct 566 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT 507 >seq13611 Length=919 Score = 334 bits (370), Expect = 2e-87 Identities = 223/248 (90%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 46754 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 46813 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 556 Query 46814 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAAAAA 46873 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||||| Sbjct 557 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 616 Query 46874 GTCAGTGAACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCCAGCGTGAT 46933 | ||| |||||||||| ||||| ||| | ||||||||||||||| ||| ||||||||| Sbjct 617 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGAT 676 Query 46934 GCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT 46993 | || ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 677 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGAT 736 Query 46994 GCTCTTCG 47001 ||||| || Sbjct 737 GCTCTGCG 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156994592886820