Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12641 98.7 2e-15 seq278 98.7 2e-15 >seq12641 Length=906 Score = 98.7 bits (108), Expect = 2e-15 Identities = 291/446 (65%), Gaps = 7/446 (2%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| ||||||||| ||||||||||||| || || |||||| | || ||| Sbjct 546 CAGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGT 487 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 || || ||||| | || | || || |||||||| | || ||| ||||| || || Sbjct 486 CAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAA 427 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| || || ||||| ||||| || || || | ||| | || ||| | | || Sbjct 426 GAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTG-- 369 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| || |||||||| ||||| |||| |||||| || || ||| ||||| Sbjct 368 -CGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGC 310 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCG 48424 | || | | | | || ||| || || | | || ||| | |||| | | Sbjct 309 GTGCAACA--TGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAG 252 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 || | || || || || ||||| || || |||||||||||||||||| | |||| Sbjct 251 TATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCC 192 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 ||||| ||||| || ||| | || ||| ||||| || || ||||| Sbjct 191 GGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCACTT 132 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTT 48570 || |||||||| || || || || || Sbjct 131 GCGGCAAAGAACGCTAGCACGTGCTT 106 >seq278 Length=37984 Score = 98.7 bits (108), Expect = 2e-15 Identities = 291/446 (65%), Gaps = 7/446 (2%) Strand=Plus/Plus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| ||||||||| ||||||||||||| || || |||||| | || ||| Sbjct 23870 CAGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGT 23929 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 || || ||||| | || | || || |||||||| | || ||| ||||| || || Sbjct 23930 CAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAA 23989 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| || || ||||| ||||| || || || | ||| | || ||| | | || Sbjct 23990 GAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTG-- 24047 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| || |||||||| ||||| |||| |||||| || || ||| ||||| Sbjct 24048 -CGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGC 24106 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCG 48424 | || | | | | || ||| || || | | || ||| | |||| | | Sbjct 24107 GTGCAACA--TGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAG 24164 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 || | || || || || ||||| || || |||||||||||||||||| | |||| Sbjct 24165 TATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCC 24224 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 ||||| ||||| || ||| | || ||| ||||| || || ||||| Sbjct 24225 GGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCACTT 24284 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTT 48570 || |||||||| || || || || || Sbjct 24285 GCGGCAAAGAACGCTAGCACGTGCTT 24310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931189355500800