Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq516 118 2e-21 seq594 113 8e-20 seq278 107 4e-18 seq12641 105 1e-17 >seq516 Length=139422 Score = 118 bits (130), Expect = 2e-21 Identities = 308/460 (67%), Gaps = 11/460 (2%) Strand=Plus/Minus Query 25585 TTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTG 25644 ||| ||||| ||||| |||| |||||||| || |||||| || ||| ||||| ||| Sbjct 84723 TTTATCAAGCACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTG 84664 Query 25645 TGCG-AGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCC 25702 ||| || | |||| | |||||| ||| ||| ||||| || |||||||| |||| Sbjct 84663 -GCGCAGCGGTTCATGACGGAAGTACAGGTACC-GGAGGTGCGCTGCTTCTACGGGTTCC 84606 Query 25703 AGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTA 25762 |||| ||||| || || || || || || || | | | || |||||||| | Sbjct 84605 AGATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGTTGTTGGATACGTACATCA 84546 Query 25763 CAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCAT--CGAGCACATACCCAGCATCAA 25820 |||| | |||| || || |||| ||||| ||| || || || ||||| | Sbjct 84545 CAGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGA-CA-ATTCCGTGCATCCA 84488 Query 25821 GAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCG 25880 || ||||| ||||| || ||||||| |||| ||| | |||||| ||| || Sbjct 84487 GAAAAAGGCCAACTGGGCGATTCGGTGGATCCGCAGC---AGCAGTTCGTTTGCCGAACG 84431 Query 25881 GCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTT 25940 || || |||||||| || ||||| || || || || ||| || || || |||| Sbjct 84430 CCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTCTT 84371 Query 25941 CTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAG 26000 |||||| ||| || || |||||||||||| || || || |||||| | Sbjct 84370 CTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCG 84311 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || || || | |||| || ||||| |||||| | ||| Sbjct 84310 TGATGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTAC 84271 >seq594 Length=267672 Score = 113 bits (124), Expect = 8e-20 Identities = 348/524 (66%), Gaps = 21/524 (4%) Strand=Plus/Plus Query 221687 TCCACAAAAGCGTTTAGG-GCAACGCTGGCCAGGTTACACACGGCCACCTCGTCC-TTGT 221744 |||||||| |||| | | |||| | ||| ||||| ||||| || ||||| ||| ||| Sbjct 92605 TCCACAAA-GCGTGGAAGTGCAATGGAGGCAAGGTTGCACACCGCGACCTCATCCCTTGA 92663 Query 221745 TGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGT 221804 || |||||| ||| |||||||| || ||||| |||||||||| || | | || | Sbjct 92664 TG-TATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGATGACTCCAACATTCTTCT 92722 Query 221805 GATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT-AAAGGGACCGCCAGTCTCCAGC 221863 |||| || || || || ||||||||||| ||||| ||||||| |||| || |||| | Sbjct 92723 GATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAGGGA-CGCCCGTTTCCATC 92781 Query 221864 TGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCC 221923 || | | || || ||| || | ||| ||| | ||||||| || Sbjct 92782 TGCGATTCGAGTATGGCAAACCACAGGGATTGGGCCTGCACGG---TCTTGAC----GCC 92834 Query 221924 TCGGT----CTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTC 221979 ||| | | |||||||||| || | | | | ||| | ||||| || || Sbjct 92835 TCGATTCTCCCTTTCATACCCCTCGTATAACTTTTTAAAATCATCACCATAGCAGTCACT 92894 Query 221980 CAGGCCTGGACACCT-GGCGGGACACATCAGACTCCA-GTGCTTGTTGTCTTTGACCCTC 222037 ||| ||||| | | ||||| | |||||| |||| ||| | || || || | | Sbjct 92895 CAGTCCTGGCGCCGTATGCGGGTC-CATCAGCGTCCACTTGCCTCCGCTC-TTCACACGC 92952 Query 222038 TGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCC 222097 | |||||| ||||| || ||||| || || | ||| | ||||| | || || || ||| Sbjct 92953 TCCATGAATAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGCGCCCTATGGTCTTCC 93012 Query 222098 ACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGA 222157 || | |||||| ||| | | ||| | ||| || ||| | ||||| ||||| | Sbjct 93013 TTACCCGTATTTTTCTTCAAAAGAAGAAAATTAAATATATCACCATGCCAAGGCTCTAAG 93072 Query 222158 TAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||| ||| | ||||| |||||| || |||||||| || Sbjct 93073 TAGATGGCAAAGGCGCCTTTACGCTTGCCACCCCCCTGATCTAC 93116 >seq278 Length=37984 Score = 107 bits (118), Expect = 4e-18 Identities = 370/570 (65%), Gaps = 9/570 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||| ||||||| | || | | | | |||||| | || || || ||| Sbjct 24427 GATATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCATCTGGACGGTGGAGGAAATCGAT 24368 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || || ||| ||| | |||| | | | ||| ||| || ||| ||||| Sbjct 24367 TTGAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAAGTTCTTTATCAAG 24308 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || |||||||| || |||||| || ||| ||||| ||| || | Sbjct 24307 CACGTGCTAGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTGGCTCAGCGG 24248 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | |||||| ||| ||| ||||| || |||||||| |||||||| ||||| Sbjct 24247 TTCATGACGGAAGTACAGGTACC-GGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCAT 24189 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || || || || || || | ||| || |||||||| ||||| | Sbjct 24188 TGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGGA 24129 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCAT--CGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 |||| || || |||| ||||| ||| || || || ||||| ||| ||||| Sbjct 24128 GGAGAAGGACCGCATGTTGCACGCCATTTCGA-CA-ATTCCGTGCATCCAGAAAAAGGCC 24071 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||| || ||||||| |||| ||| | |||||| || || || || ||| Sbjct 24070 AACTGGGCGATTCGGTGGATCCGCAGC---AGCAGTTCGTTTGCAGAACGCCTTGTTGCC 24014 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 ||||| || ||||| || || || || ||| || || || | |||||||| ||| Sbjct 24013 TTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAAG 23954 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||||||||| || || || |||||| | || || || Sbjct 23953 AAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGC 23894 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | |||| || ||||| |||||| | ||| Sbjct 23893 TTGCACACGGACTTTGCGTGCCTGTTGTAC 23864 >seq12641 Length=906 Score = 105 bits (116), Expect = 1e-17 Identities = 303/459 (66%), Gaps = 9/459 (2%) Strand=Plus/Plus Query 25585 TTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTG 25644 ||| ||||| ||||| | || |||||||| || |||||| || ||| ||||| ||| Sbjct 100 TTTATCAAGCACGTGCTAGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTG 159 Query 25645 TGCGAGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCA 25703 || | |||| | |||||| ||| ||| ||||| || |||||||| ||||| Sbjct 160 GCTCAGCGGTTCATGACGGAAGTACAGGTACC-GGAGGTGCGCTGCTTCTACGGGTTCCA 218 Query 25704 GATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTAC 25763 ||| ||||| || || || || || || || | ||| || |||||||| || Sbjct 219 GATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCAC 278 Query 25764 AGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCAT--CGAGCACATACCCAGCATCAAG 25821 ||| | |||| || || |||| ||||| ||| || || || ||||| || Sbjct 279 AGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGA-CA-ATTCCGTGCATCCAG 336 Query 25822 AGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGG 25881 | ||||| ||||| || ||||||| |||| ||| | |||||| || || Sbjct 337 AAAAAGGCCAACTGGGCGATTCGGTGGATCCGCAGC---AGCAGTTCGTTTGCAGAACGC 393 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 || || |||||||| || ||||| || || || || ||| || || || | ||| Sbjct 394 CTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTC 453 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||| ||| || || |||||||||||| || || || |||||| | Sbjct 454 TGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGT 513 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || || || | |||| || ||||| |||||| | ||| Sbjct 514 GATGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTAC 552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928502346532800