Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq13611 1070 0.0 >seq13611 Length=919 Score = 1070 bits (1186), Expect = 0.0 Identities = 698/767 (91%), Gaps = 23/767 (3%) Strand=Plus/Plus Query 35511 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGTAAGGCGTTCCTCG 35570 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 35571 ATATGCTGGCATGGTCAGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 35630 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 35631 ATGACGTCATTGTAGGCGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 35690 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 35691 TCACGCTAAACCCCAAACTCAAATCAACAGCCGCCGGACGCTACCAGCTTCTTTCCCGTT 35750 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 35751 GGTGGGATGCCTACCGTAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGCCAGGACG 35810 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 35811 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTGCCGATGATTGATCGTGGTGATA 35870 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 35871 TTCGTCAGGCAATTGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 35930 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 35931 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAGGCTGGCGGAACGG 35990 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 35991 TCAGAGAGATTGAGGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 36050 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 36051 CATCGTTTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 36110 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 36111 CCAGCGCGACAAA---GCCACA----TCCATC--------------ATCGCTGACATGCA 36149 ||||||||||||| |||| | | | | || |||||||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 36150 GAAGCGTCAACGTGATGTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGC 36209 || |||||| |||||||| || | || || || | |||||| |||||| | |||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 36210 TAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 36255 ||| || || || || ||| |||| ||||||| | ||||||||| Sbjct 721 TAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123863801115990