Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq13611 996 0.0 >seq13611 Length=919 Score = 996 bits (1104), Expect = 0.0 Identities = 682/770 (89%), Gaps = 29/770 (4%) Strand=Plus/Plus Query 40249 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGTAAGGCGTTCCTCG 40308 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 40309 ATATGCTGGCGTGGTCAGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 40368 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 40369 ATGACGTCATTGTAGGAGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 40428 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 40429 TCACGCTAAACCCCAAACTCAAATCAACAGCCGCCGGACGTTACCAGCTTCTTTCCCGTT 40488 ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 40489 GGTGGGATGCCTACCGTAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGCCAGGACG 40548 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 40549 CTGTGGCACTGCAACAGATTAAAGAGCGTGGCGCTTTACCGATGATTGATCGCGGTGATA 40608 |||||||| |||| |||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 40609 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCGTTGCCCGGGGCTGGTTATG 40668 |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 40669 GACAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCAGGCGGAACGG 40728 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 40729 TCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCAT 40788 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 40789 CATCGTCAGCCTGTCATGGGCGGTTAATCATTACCGTGATAACGCCATTACCTATAAAGA 40848 ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 40849 ACAGCGCGATAA---------------------GGC---CGCATTCATTATCGCTGACAT 40884 |||||||| || ||| ||| |||| ||||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTA---CTGACAT 657 Query 40885 GCAGAAACGTCAACGCAATGTAGCAGAACTCGACGCCAGATATACAAAGGAGCTTGCTGA 40944 ||||| ||||| || |||| || | ||||| || | ||| || |||||| | ||||| Sbjct 658 GCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGA 717 Query 40945 TGCTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 40993 |||||| || || || || ||| |||| ||||||| | ||||||||| Sbjct 718 TGCTAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136726494338980