Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq13611 1016 0.0 seq10087 232 2e-56 seq5240 131 4e-26 >seq13611 Length=919 Score = 1016 bits (1126), Expect = 0.0 Identities = 684/767 (89%), Gaps = 23/767 (3%) Strand=Plus/Plus Query 37911 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGTAAGGCGTTCCTCG 37970 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 37971 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 38030 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 38031 ATGACGTCATTGTAGGAGGAGAGCTATTCACTGATTACTCAGATCACCCTCGCAAACTTG 38090 |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 38091 TCACGCTAAACCCCAAACTCAAATCAACAGCAGCCGGACGTTACCAGCTTCTTTCCCGTT 38150 ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 38151 GGTGGGATGCCTATCGTAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGCCAGGACG 38210 ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 38211 CTGTGGCACTGCAGCAGATTAAAGAGCGTGGCGCTTTACCGATGATTGATCGCGGTGATA 38270 |||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 38271 TTCGTCAGGCTATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGCTATG 38330 | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 38331 GCCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGTTGGCGGAACGG 38390 | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 38391 TCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCAT 38450 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 38451 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAGA 38510 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 38511 GCAGCGCGATAA---------------------GGCCACATCCACAATCGCTGACATGCA 38549 |||||||| || ||| | | |||| |||||||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 38550 GAAGCGTCAACGTGACGTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGATGC 38609 || |||||| ||||| || || | |||||||| | ||| || |||||| | |||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 38610 TAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 38655 ||| || || || || ||| |||| ||||||| | ||||| ||| Sbjct 721 TAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 232 bits (256), Expect = 2e-56 Identities = 224/288 (78%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 31856 TCACAAAGAAAAAATCCCCGGCCGCCACCGAGGATTTTAAGCAAATTGATATGCAATTCT 31915 |||| || |||||| |||||| || |||||| || | | ||||| | ||| | |||| Sbjct 571 TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT 512 Query 31916 GAGGGAATTACTGGATCAATCCACAGGAGTCATTATGACAAATACAGCAAAAATACTCAA 31975 |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 511 GAGGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAATACAGCAAAAATACTCAA 452 Query 31976 CTTCGGCAGAGGTAACTTTGCCGAACAGGAGCGAAGAGTGGCTGATATCGATGATGGTTA 32035 ||||||||||||||||||||||| ||||||||| | ||||| ||| ||||||||||||| Sbjct 451 CTTCGGCAGAGGTAACTTTGCCGGACAGGAGCGTAATGTGGCAGATCTCGATGATGGTTA 392 Query 32036 CACCAGATTCGCTAACGAGCTGCTGGAAGCTATCGCAAGTGCCGATTTAACCGCTCGCCA 32095 | ||||| | | || |||||| || ||| | | || ||| | ||| || || Sbjct 391 CGCCAGACTATCAAATATGCTGCTTGAGGCTTATTCGGGCGCAGATCTGACCAAGCGACA 332 Query 32096 GTTGAAAGTTATGCTGGCCTACGTCCGGAAAACATATGGATTCAATAA 32143 ||| ||||| |||| ||| | || ||||| ||||| | ||||| Sbjct 331 GTTTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTGGAATAA 284 >seq5240 Length=752 Score = 131 bits (144), Expect = 4e-26 Identities = 77/80 (96%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 23814 CCTACCGTTAGCGCAATATCCTCGTTCTCCTGATCGCGGCGTTTTATGTATTGCTGGTTT 23873 ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 23874 CTTTCCCGTTCATCCAGCAG 23893 |||||||||||||||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAG 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132846253881510