Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq13611 1040 0.0 seq10087 782 0.0 seq5240 140 8e-29 >seq13611 Length=919 Score = 1040 bits (1152), Expect = 0.0 Identities = 691/767 (90%), Gaps = 23/767 (3%) Strand=Plus/Plus Query 38358 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGTAAGGCGTTCCTCG 38417 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 38418 ATATGCTGGCGTGGTCAGAGGGAACAGATAACGGACGTCAGAAAACCAGAAATCATGGTT 38477 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 38478 ATGACGTCATTGTAGGAGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 38537 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 38538 TCACGCTAAACCCAAAACTCAAATCAACAGCAGCCGGACGCTACCAGCTTCTTTCCCGTT 38597 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 38598 GGTGGGATGCCTACCGCAAGCAGCTTGGGCTGAAAGACTTCTCTCCGAAAAGCCAGGACG 38657 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 38658 CTGTTGCACTACAGCAGATTAAAGAGCGTGGCGCTTTACCGATGATTGATCGCGGTGATA 38717 |||| ||| | ||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 38718 TTCGTCAGGCTATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 38777 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 38778 GTCAGTTCGAGCATAAGGCTGACAACCTGATTGCAAAATTCAAAGAAGCAGGCGGAACGG 38837 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 38838 TCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCAT 38897 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 38898 CATCGTTTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 38957 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 38958 CCAGCGCGATAAA---GCCA---------------CGTAC---ATCATCGCTGACATGCA 38996 ||||||||| ||| |||| || || || |||||||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 38997 GAAGCGTCAACGTGATGTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGC 39056 || |||||| |||||||| || | ||||| || | |||||| |||||| | |||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 39057 TAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 39102 ||| || || || || ||| |||| ||||||| | ||||| ||| Sbjct 721 TAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 782 bits (866), Expect = 0.0 Identities = 471/502 (94%), Gaps = 1/502 (0%) Strand=Plus/Minus Query 32178 ACTGGATCAATCCACAGGAGTCATTATGACAAATACAGCAAAAATACTCAACTTCTGCAG 32237 |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 502 ACTGGATCTATCAACAGGAGTCATTATGACAAATACAGCAAAAATACTCAACTTCGGCAG 443 Query 32238 AGGTAACTTTGCCAAACAGGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACT 32297 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 AGGTAACTTTGCCGGACAGGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACT 383 Query 32298 ATCAAATATGCTGCTTGAGGCTTATTCAGGCGCAGATCTGACCAAGCGACAGTTTAAAGT 32357 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 382 ATCAAATATGCTGCTTGAGGCTTATTCGGGCGCAGATCTGACCAAGCGACAGTTTAAAGT 323 Query 32358 GCTGCTTGCCATTCTGCGTAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGA 32417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 GCTGCTTGCCATTCTGCGTAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGA 263 Query 32418 TTCTCAACTTAGCGAGATTACAAAGTTACCCGTCAAACGGTGCAATGAAGCCAAGTTAGA 32477 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 262 TTCTCAACTTAGCGAGATTACAAAGTTACCTGTCAAACGGTGCAATGAAGCCAAGTTAGA 203 Query 32478 ACTCGTCAGAATGAATATTATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACAT 32537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 202 ACTCGTCAGAATGAATATTATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACAT 143 Query 32538 CTCAGAATGGTGTATCCCTCAAAACGAGGGAAANNNNNNNNNNNNNNNNNNNNNAACATC 32597 |||||||||||| |||||||||||||||||||| |||||| Sbjct 142 CTCAGAATGGTGCATCCCTCAAAACGAGGGAAAATCCCCTAAAACGAGGGATAAAACATC 83 Query 32598 CCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGGACACAAAAGACACTAATACaaa 32657 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 82 CCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGGACACAAAAGACACTATTACAAA 23 Query 32658 ag-aaaaaagaaaaGATTATTC 32678 || ||||||||||||||||||| Sbjct 22 AGAAAAAAAGAAAAGATTATTC 1 >seq5240 Length=752 Score = 140 bits (154), Expect = 8e-29 Identities = 85/90 (94%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 24768 CCTACCGTTAGCGCAATTTCCTCGTTCTCCTGGTCACGGCGTTTTATGTATTGCTGGTTT 24827 ||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 24828 CTTTCCCGTTCATCCAGCAGTGCCAGCACA 24857 ||||||||||||||||||||| |||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCACA 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130104814415680