Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq8220 1503 0.0 seq13611 1489 0.0 seq10087 163 9e-36 >seq8220 Length=837 Score = 1503 bits (1666), Expect = 0.0 Identities = 837/838 (99%), Gaps = 1/838 (0%) Strand=Plus/Minus Query 17504 CCGCCACGCCGCATCTTGCCGTTTATGACCCGACGGTACAGTTTGAGTTCTGGTTCTCGG 17563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 CCGCCACGCCGCATCTTGCCGTTTATGACCCGACGGTACAGTTTGAGTTCTGGTTCTCGG 778 Query 17564 AAAAGCAGATTGCGGATATCAGACAGGTTGAAACCAGCACGCGTTATCTTGGTACGGCGC 17623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 AAAAGCAGATTGCGGATATCAGACAGGTTGAAACCAGCACGCGTTATCTTGGTACGGCGC 718 Query 17624 TGTACTGGATAGCCGCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCC 17683 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TGTACTGGATAGCCGCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCC 658 Query 17684 GCAGTGTGAACACCGTTGGCAAATCGGCATTCGTGGAGGCCGTCGGTCGGGCGAGCGATG 17743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GCAGTGTGAACACCGTTGGCAAATCGGCATTCGTGGAGGCCGTCGGTCGGGCGAGCGATG 598 Query 17744 ATGCGGAAGGTTACCTGGATTTTTTCAAAGGCAAGATAACCGAATCCCATCTCGGCAAGG 17803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 ATGCGGAAGGTTACCTGGATTTTTTCAAAGGCAAGATAACCGAATCCCATCTCGGCAAGG 538 Query 17804 AGCTGCTGGAAAAAGTCGAGCTGACGGAGGATAACGCCAGCAGACTGGAGGAGTTTTCGA 17863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AGCTGCTGGAAAAAGTCGAGCTGACGGAGGATAACGCCAGCAGACTGGAGGAGTTTTCGA 478 Query 17864 AAGAGTGGAAGGATGCCAGTGATAAGTGGAATGCCATGTGGGCTGTCAAAATTGAGCAGA 17923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 AAGAGTGGAAGGATGCCAGTGATAAGTGGAATGCCATGTGGGCTGTCAAAATTGAGCAGA 418 Query 17924 CCAAAGACGGCAAACATTATGTCGCGGGTATTGGCCTCAGCATGGAGGACACGGAGGAAG 17983 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 CCAAAGACGGCAAACATTATGTCGCGGGTATTGGCCTCAGCATGGAGGACACGGAGGAAG 358 Query 17984 GCAAACTGAGCCAGTTTCTGGTTGCCGCCAATCGTATCGCATTTATTGACCCGGCAAACG 18043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GCAAACTGAGCCAGTTTCTGGTTGCCGCCAATCGTATCGCATTTATTGACCCGGCAAACG 298 Query 18044 GGAATGAAACGCCGATGTTTGTGGCGCAGGGCAACCAGATATTCATGAACGACGTGTTCC 18103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GGAATGAAACGCCGATGTTTGTGGCGCAGGGCAACCAGATATTCATGAACGACGTGTTCC 238 Query 18104 TGAAGCGCCTGACGGCCCCCACCATTACCAGCGGCGGCAATCCTCCGGCCTTTTCCCTGA 18163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TGAAGCGCCTGACGGCCCCCACCATTACCAGCGGCGGCAATCCTCCGGCCTTTTCCCTGA 178 Query 18164 CACCGGACGGAAAGCTGACCGCTAAAAATGCGGATATCAGTGGCAGTGTGAATGCGAACT 18223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 CACCGGACGGAAAGCTGACCGCTAAAAATGCGGATATCAGTGGCAGTGTGAATGCGAACT 118 Query 18224 CCGGGACGCTCAGTAATGTGACGATAGCTGAAAACTGTACGATAAACGGTACGCTGAGGG 18283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 CCGGGACGCTCAGTAATGTGACGATAGCTGAAAACTGTACGATAAACGGTACGCTGAGGG 58 Query 18284 CGGAAAAAATCGTCGGGGACATTGTAAAGGCGGCGAGCGCGGCTTTTCCGCGCCAGCG 18341 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 57 CGGAAAAAATCGTCGGGGACATTGTAAAGGCGGCGAGCGCGGC-TTTCCGCGCCAGCG 1 >seq13611 Length=919 Score = 1489 bits (1650), Expect = 0.0 Identities = 877/919 (95%), Gaps = 0/919 (0%) Strand=Plus/Plus Query 44067 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGTAAGGCGTTCCTCG 44126 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 44127 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGGCAGAAAACCAGAAATCATGGTT 44186 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 44187 ATGACGTCATTGTAGGCGGAGAGCTATTCACTGATTACTCTGATCACCCTCGCAAACTTG 44246 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 44247 TCACGCTAAACCCAAAACTCAAATCAACAGCCGCCGGGCGTTACCAGCTTCTTTCCCGTT 44306 |||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 44307 GGTGGGATGCCTATCGTAAGCAGCTTGGACTGAAAGACTTCTCTCCGAAAAGCCAGGACG 44366 ||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 44367 CTGTGGCACTGCAGCAGATTAAAGAGCGTGGCGCTTTACCGATGATTGATCGCGGTGATA 44426 |||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 44427 TTCGTCAGGCAATTGACCGTTGCAGCAACATCTGGGCTTCACTGCCGGGGGCTGGTTATG 44486 | ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 44487 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 44546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 44547 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 44606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 44607 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 44666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 44667 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 44726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 44727 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 44786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 44787 TAAAGCTGAAAATGATGCTCTGCGTGATNNNNNNNNNNNNNNNNNNNNNNGGTTGCACAT 44846 |||||||||||||||||||||||||||| |||||||||| Sbjct 721 TAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACAT 780 Query 44847 CAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGC 44906 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGC 840 Query 44907 CTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGAT 44966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGAT 900 Query 44967 CACTATGCAAAAACAACTG 44985 ||||||||||||||||||| Sbjct 901 CACTATGCAAAAACAACTG 919 >seq10087 Length=869 Score = 163 bits (180), Expect = 9e-36 Identities = 98/103 (95%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 36516 CTCACCAATAAAAAACGCCCGGAGGCAACCGAGCGTTCTGAACAAATCCAGATGGAATTC 36575 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 572 CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC 513 Query 36576 TGAGGTCATTACTGGATCAATCCACAGGAGTAATTATGACAAA 36618 |||||||||||||||||| ||| |||||||| ||||||||||| Sbjct 512 TGAGGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151147041727500