Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq13611 976 0.0 seq10087 89.7 1e-13 >seq13611 Length=919 Score = 976 bits (1082), Expect = 0.0 Identities = 675/767 (88%), Gaps = 23/767 (3%) Strand=Plus/Plus Query 36327 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGGAATCAATAATCAACGTAAGGCGTTCCTCG 36386 |||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 36387 ATATGCTGGCATGGTCAGAAGGAACGGATAACGGACGGCAGAAAACCAGAAATCATGGTT 36446 |||||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 36447 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAGCTTG 36506 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 36507 TCACGCTAAACCCCAAACTCAAATCAACAGCAGCCGGACGTTATCAGCTTCTTTCACGCT 36566 ||||||||||||| |||||||||||||||| |||||||| || ||||||||||| || | Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 36567 GGTGGGATGCTTACCGTAAGCAGCTTGGCCTGAAAGACTTCTCCCCCAAAAGCCAGGACG 36626 |||||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 36627 CAGTGGCATTGCAGCAGATTAAAGAACGTGGCGCTTTACCGATGATTGATCGCGGTGATA 36686 | |||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 36687 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGGGCTGGTTATG 36746 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 36747 GTCAGTTCGAGCATAAGGCTGATAACCTGATTGCAAAATTCAAAGAAGCTGGCGGAATGG 36806 |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| || Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 36807 TCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCAT 36866 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 36867 CATCGTCTGCCTGTCATGGGCGGTTAATCATTACCGTGATAACGCCATTACCTACAAAGA 36926 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 36927 GCAGCGCGATAA---------------------GGCCACATCCACAATCGCTGACATGCA 36965 |||||||| || ||| | | |||| |||||||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 36966 GAAGCGTCAACATGATGTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGC 37025 || |||||| | |||||| || | ||||| || | |||||| |||||| | |||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 37026 TAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 37071 ||| || || || || ||| |||| ||||||| | ||||| ||| Sbjct 721 TAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 89.7 bits (98), Expect = 1e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 29756 TCACAAAGAAAAAATCCCCGGCCGCCACCGAGGATTTTAAGCAAATTGATATGCAATTCT 29815 |||| || |||||| |||||| || |||||| || | | ||||| | ||| | |||| Sbjct 571 TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT 512 Query 29816 GAGGGAATTACTGGATCAATCCACAGGAGTAATTATGACAAA 29857 |||| ||||||||||| ||| |||||||| ||||||||||| Sbjct 511 GAGGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126483683172600