Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019716.1 Length=44510 Score E Sequences producing significant alignments: (Bits) Value seq8220 1195 0.0 seq13611 293 7e-75 >seq8220 Length=837 Score = 1195 bits (1324), Expect = 0.0 Identities = 734/782 (94%), Gaps = 0/782 (0%) Strand=Plus/Minus Query 17132 CCGCCACGCCGCATCTTGCCGTTTATGATCCGACGGTACAGTTTGAGTTCTGGTTCTCGG 17191 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 837 CCGCCACGCCGCATCTTGCCGTTTATGACCCGACGGTACAGTTTGAGTTCTGGTTCTCGG 778 Query 17192 AAAAGCGGATTGCGGATATCAGGCAGGTTGAAACCACAGCCCGCTATCTTGGTACGGCGC 17251 |||||| ||||||||||||||| ||||||||||||| | || |||||||||||||||| Sbjct 777 AAAAGCAGATTGCGGATATCAGACAGGTTGAAACCAGCACGCGTTATCTTGGTACGGCGC 718 Query 17252 TGTACTGGATAGCCGCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCC 17311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TGTACTGGATAGCCGCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCC 658 Query 17312 GCAGTGTGAACACAGTCGGCAAATCGGCATTTGTGGAGGCCGTCGGTCGGGCGAGCGATG 17371 ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 657 GCAGTGTGAACACCGTTGGCAAATCGGCATTCGTGGAGGCCGTCGGTCGGGCGAGCGATG 598 Query 17372 ATGCGGAAGGTTACCTGGATTTTTTCAAAGGCCAGATAACCGAATCCCATCTCGGCAAGG 17431 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 597 ATGCGGAAGGTTACCTGGATTTTTTCAAAGGCAAGATAACCGAATCCCATCTCGGCAAGG 538 Query 17432 AGCTGCTGGAAAAAGTCGACCTGACGGAGGATAACGCCAGCAGACTGGATGAGTTTTCGA 17491 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 537 AGCTGCTGGAAAAAGTCGAGCTGACGGAGGATAACGCCAGCAGACTGGAGGAGTTTTCGA 478 Query 17492 AAGAGTGGAAAGACGCCAACGATAAATGGAATGCCATGTGGGGCGTCAAAATTGAGCAGA 17551 |||||||||| || |||| ||||| |||||||||||||||| |||||||||||||||| Sbjct 477 AAGAGTGGAAGGATGCCAGTGATAAGTGGAATGCCATGTGGGCTGTCAAAATTGAGCAGA 418 Query 17552 CCGAAGACGGTAAGCATTATGTCGCGGGGCTTGGCCTCAGCATGGAGGATACAGAGGAAG 17611 || ||||||| || |||||||||||||| ||||||||||||||||||| || ||||||| Sbjct 417 CCAAAGACGGCAAACATTATGTCGCGGGTATTGGCCTCAGCATGGAGGACACGGAGGAAG 358 Query 17612 GCAAACTGAGCCAGTTTCTGGTTGCCGCCAATCGTATCGCGTTTATTGACCCGGCAAACG 17671 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 357 GCAAACTGAGCCAGTTTCTGGTTGCCGCCAATCGTATCGCATTTATTGACCCGGCAAACG 298 Query 17672 GGAATGAAACGCCGATGTTTGTGGCGCAGGGCAACCAGATATTCATGAACGACGTGTTCC 17731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GGAATGAAACGCCGATGTTTGTGGCGCAGGGCAACCAGATATTCATGAACGACGTGTTCC 238 Query 17732 TCAAACGCCTGACGGCCCCCACCATTACCAGTGGTGGAAATCCACCGGTATTTTCCCTGA 17791 | || |||||||||||||||||||||||||| || || ||||| |||| |||||||||| Sbjct 237 TGAAGCGCCTGACGGCCCCCACCATTACCAGCGGCGGCAATCCTCCGGCCTTTTCCCTGA 178 Query 17792 CACCGGACGGAAAGCTGACCGCTAAAAATGCGGATATCAGTGGCAGTGTGAATGCGAACT 17851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 CACCGGACGGAAAGCTGACCGCTAAAAATGCGGATATCAGTGGCAGTGTGAATGCGAACT 118 Query 17852 CCGGGACGCTCAACAACGTCACGATAAATGAAAACTGTACGATTAAGGGTATGCTGGAGG 17911 |||||||||||| || || |||||| ||||||||||||||| || |||| |||| || Sbjct 117 CCGGGACGCTCAGTAATGTGACGATAGCTGAAAACTGTACGATAAACGGTACGCTGAGGG 58 Query 17912 CG 17913 || Sbjct 57 CG 56 >seq13611 Length=919 Score = 293 bits (324), Expect = 7e-75 Identities = 219/257 (85%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 43244 GATAGATGAGTGAGCAGAGTCGCCGCGATTATTTATGCTCTGGTTATCTGCATCATCGTC 43303 ||| |||| ||||||||||| |||||||||| | |||||||||||||||||||||||| Sbjct 488 GATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTC 547 Query 43304 TGCCTGTCGTGGGCGGTCAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGT 43363 |||||||| ||||| || ||||||||||||||||||||||| ||||||||| ||||| Sbjct 548 TGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGC 607 Query 43364 GATAAAAAAGTCAGTGAGCTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAACGC 43423 || ||||| | ||| || ||||||| ||||| ||| | ||||||||||||||| || Sbjct 608 GACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGT 667 Query 43424 CAGCGTGCTGCTGATGTACTCGATGCTAAATACACGAAGGAGTTGGCTGATGCGAAAGCT 43483 ||||||| || || || |||||||| ||||||||||||||||| |||||||| |||||| Sbjct 668 CAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCT 727 Query 43484 GAAAATGATGCTCTTCG 43500 |||||||||||||| || Sbjct 728 GAAAATGATGCTCTGCG 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142260555337680