Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq13611 753 0.0 seq10087 681 0.0 seq5240 122 2e-23 >seq13611 Length=919 Score = 753 bits (834), Expect = 0.0 Identities = 633/769 (82%), Gaps = 16/769 (2%) Strand=Plus/Plus Query 38167 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGCAAGGCGTTCCTCG 38226 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 38227 ATATGCTGGCGTGGTCAGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 38286 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 38287 ATGACGTCATTGTTGGCGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 38346 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 38347 TCACGCTAAACCCCAAACTCAAATCAACAGCAGCCGGACGTTACCAGCTTCTTTCCCGTT 38406 ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 38407 GGTGGGATGCCTATCGTAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGCCAGGACG 38466 ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 38467 CTGTGGCATTGCAGCAGATTAAAGAGCGTGGCGCTTTACCGATGATTGATCGGGGTGATA 38526 |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 38527 TTCGTCAGGCTATTGATCGTTGCAGCAATATTTGGGCTTCATTGCCCGGTGCTGGCTACG 38586 | |||||||| || || |||||||||||||| ||||||||| |||| || ||||| || | Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 38587 GTCAGTATGAACACAAGATCGATAGTCTGATTGCCAAATTCAAAGAAGCTGGCGGGGTGG 38646 |||||| || || ||| || || |||||||| |||||||||||||| ||||| || Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 38647 TTAATGAAACTTCGCTATAAGCTG-GTTATTTCTGCTTTCCTCCTGACT--TTATTCGGT 38703 | | || | | ||| ||| | || | | | || |||| || |||| | Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGC-GATTATCTCCGCTCTGGTTATCTGCA 539 Query 38704 TCTCTCGTCTG---GTCA------GCTAATCATTACCACAATAAAGCCATTGAATACAAA 38754 || ||||||| |||| | ||||||||||| |||| |||||| |||||| Sbjct 540 TC-ATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAA 598 Query 38755 AAACAGCGCGACGAAAACGCTATGGCATTAGATTCGGCTATGGCGACGATCTCTGATATG 38814 ||||||||| |||| || | | | | | ||| | ||| | || |||| ||| Sbjct 599 GCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATG 658 Query 38815 CAGAAGCGTCAACGTGACGTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGAT 38874 |||| |||||| ||||| || || | |||||||| | ||| || |||||| | |||||| Sbjct 659 CAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGAT 718 Query 38875 GCTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 38922 ||||| || || || || ||| |||| ||||||| | ||||||||| Sbjct 719 GCTAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 681 bits (754), Expect = 0.0 Identities = 391/400 (98%), Gaps = 0/400 (0%) Strand=Plus/Minus Query 30790 ACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATAC 30849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869 ACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATAC 810 Query 30850 TTACATATGGTTCGTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCGTTGCTT 30909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 809 TTACATATGGTTCGTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCGTTGCTT 750 Query 30910 AACAAAATCGCAATGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGAGTTGATAAGTCG 30969 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 749 AACAAAATCGCAATGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGCGTTGATAAGTCG 690 Query 30970 CAGATCAGCAGGTGGAAGAGGGATTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTT 31029 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 689 CAGATCAGCAGGTGGAAGAGGGACTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTT 630 Query 31030 GAATGGGGTGTCGTTGACGACGACATGGCTCGATTGGCACGACAAGTTGCTTCGATTCTC 31089 |||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 629 GAATGGGGGGTCGTTGACGACGACATGGCTCGATTGGCGCGACAAGTTGCTGCGATTCTC 570 Query 31090 ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAATTCTGA 31149 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 569 ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA 510 Query 31150 GGTCATTACTGGATCAATCCACAGGAGTAATTATGACAAA 31189 ||||||||||||||| ||| |||||||| ||||||||||| Sbjct 509 GGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAA 470 >seq5240 Length=752 Score = 122 bits (134), Expect = 2e-23 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 23985 CCTACCGTTAGCGCAATTTCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGTTTT 24044 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 24045 CTTTCCAGCTCATCCAGCAG 24064 |||||| | ||||||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAG 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132721497593100