Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019720.1 Length=44120 Score E Sequences producing significant alignments: (Bits) Value seq13611 996 0.0 seq10087 435 9e-118 >seq13611 Length=919 Score = 996 bits (1104), Expect = 0.0 Identities = 682/770 (89%), Gaps = 29/770 (4%) Strand=Plus/Plus Query 41589 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGTAAGGCGTTCCTCG 41648 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 41649 ATATGCTGGCGTGGTCAGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 41708 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 41709 ATGACGTCATTGTAGGAGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 41768 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 41769 TCACGCTAAACCCCAAACTCAAATCAACAGCCGCCGGACGTTACCAGCTTCTTTCCCGTT 41828 ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 41829 GGTGGGATGCCTACCGTAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGCCAGGACG 41888 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 41889 CTGTGGCACTGCAACAGATTAAAGAGCGTGGCGCTTTACCGATGATTGATCGCGGTGATA 41948 |||||||| |||| |||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 41949 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCGTTGCCCGGGGCTGGTTATG 42008 |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 42009 GACAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCAGGCGGAACGG 42068 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 42069 TCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCAT 42128 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 42129 CATCGTCAGCCTGTCATGGGCGGTTAATCATTACCGTGATAACGCCATTACCTATAAAGA 42188 ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 42189 ACAGCGCGATAA---------------------GGC---CGCATTCATTATCGCTGACAT 42224 |||||||| || ||| ||| |||| ||||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTA---CTGACAT 657 Query 42225 GCAGAAACGTCAACGCAATGTAGCAGAACTCGACGCCAGATATACAAAGGAGCTTGCTGA 42284 ||||| ||||| || |||| || | ||||| || | ||| || |||||| | ||||| Sbjct 658 GCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGA 717 Query 42285 TGCTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 42333 |||||| || || || || ||| |||| ||||||| | ||||||||| Sbjct 718 TGCTAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 435 bits (482), Expect = 9e-118 Identities = 258/269 (96%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 34140 ACACCTATGGTGTATGCATTTATTTGCATACCTTCAATCAATTGTTATCTAAGGAAATAC 34199 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 869 ACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATAC 810 Query 34200 TTACATATGGTTCGTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCTTTGCTT 34259 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 809 TTACATATGGTTCGTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCGTTGCTT 750 Query 34260 AACAAAATCGCAATGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGAGTTGATAAGTCG 34319 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 749 AACAAAATCGCAATGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGCGTTGATAAGTCG 690 Query 34320 CAGATCAGCAGGTGGAAGAGGGATTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTT 34379 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 689 CAGATCAGCAGGTGGAAGAGGGACTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTT 630 Query 34380 GAATGGGGTGTTGAAGACGAGGAGTTGGC 34408 |||||||| || | ||||| || |||| Sbjct 629 GAATGGGGGGTCGTTGACGACGACATGGC 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141012992453580