Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq13611 1570 0.0 seq8220 1503 0.0 seq5240 1357 0.0 >seq13611 Length=919 Score = 1570 bits (1740), Expect = 0.0 Identities = 895/919 (97%), Gaps = 0/919 (0%) Strand=Plus/Plus Query 43869 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTCCTCG 43928 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 43929 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 43988 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 43989 ATGACGTCATTGTAGGCGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 44048 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 44049 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 44108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 44109 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 44168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 44169 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 44228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 44229 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 44288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 44289 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 44348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 44349 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 44408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 44409 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 44468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 44469 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 44528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 44529 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 44588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 44589 TAAAGCTGAAAATGATGCTCTGCGTGATNNNNNNNNNNNNNNNNNNNNNNGGTTGCACAT 44648 |||||||||||||||||||||||||||| |||||||||| Sbjct 721 TAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACAT 780 Query 44649 CAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGC 44708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGC 840 Query 44709 CTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGAT 44768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGAT 900 Query 44769 CACTATGCAAAAACAACTG 44787 ||||||||||||||||||| Sbjct 901 CACTATGCAAAAACAACTG 919 >seq8220 Length=837 Score = 1503 bits (1666), Expect = 0.0 Identities = 837/838 (99%), Gaps = 1/838 (0%) Strand=Plus/Minus Query 17504 CCGCCACGCCGCATCTTGCCGTTTATGACCCGACGGTACAGTTTGAGTTCTGGTTCTCGG 17563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 CCGCCACGCCGCATCTTGCCGTTTATGACCCGACGGTACAGTTTGAGTTCTGGTTCTCGG 778 Query 17564 AAAAGCAGATTGCGGATATCAGACAGGTTGAAACCAGCACGCGTTATCTTGGTACGGCGC 17623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 AAAAGCAGATTGCGGATATCAGACAGGTTGAAACCAGCACGCGTTATCTTGGTACGGCGC 718 Query 17624 TGTACTGGATAGCCGCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCC 17683 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TGTACTGGATAGCCGCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCC 658 Query 17684 GCAGTGTGAACACCGTTGGCAAATCGGCATTCGTGGAGGCCGTCGGTCGGGCGAGCGATG 17743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GCAGTGTGAACACCGTTGGCAAATCGGCATTCGTGGAGGCCGTCGGTCGGGCGAGCGATG 598 Query 17744 ATGCGGAAGGTTACCTGGATTTTTTCAAAGGCAAGATAACCGAATCCCATCTCGGCAAGG 17803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 ATGCGGAAGGTTACCTGGATTTTTTCAAAGGCAAGATAACCGAATCCCATCTCGGCAAGG 538 Query 17804 AGCTGCTGGAAAAAGTCGAGCTGACGGAGGATAACGCCAGCAGACTGGAGGAGTTTTCGA 17863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AGCTGCTGGAAAAAGTCGAGCTGACGGAGGATAACGCCAGCAGACTGGAGGAGTTTTCGA 478 Query 17864 AAGAGTGGAAGGATGCCAGTGATAAGTGGAATGCCATGTGGGCTGTCAAAATTGAGCAGA 17923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 AAGAGTGGAAGGATGCCAGTGATAAGTGGAATGCCATGTGGGCTGTCAAAATTGAGCAGA 418 Query 17924 CCAAAGACGGCAAACATTATGTCGCGGGTATTGGCCTCAGCATGGAGGACACGGAGGAAG 17983 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 CCAAAGACGGCAAACATTATGTCGCGGGTATTGGCCTCAGCATGGAGGACACGGAGGAAG 358 Query 17984 GCAAACTGAGCCAGTTTCTGGTTGCCGCCAATCGTATCGCATTTATTGACCCGGCAAACG 18043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GCAAACTGAGCCAGTTTCTGGTTGCCGCCAATCGTATCGCATTTATTGACCCGGCAAACG 298 Query 18044 GGAATGAAACGCCGATGTTTGTGGCGCAGGGCAACCAGATATTCATGAACGACGTGTTCC 18103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GGAATGAAACGCCGATGTTTGTGGCGCAGGGCAACCAGATATTCATGAACGACGTGTTCC 238 Query 18104 TGAAGCGCCTGACGGCCCCCACCATTACCAGCGGCGGCAATCCTCCGGCCTTTTCCCTGA 18163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TGAAGCGCCTGACGGCCCCCACCATTACCAGCGGCGGCAATCCTCCGGCCTTTTCCCTGA 178 Query 18164 CACCGGACGGAAAGCTGACCGCTAAAAATGCGGATATCAGTGGCAGTGTGAATGCGAACT 18223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 CACCGGACGGAAAGCTGACCGCTAAAAATGCGGATATCAGTGGCAGTGTGAATGCGAACT 118 Query 18224 CCGGGACGCTCAGTAATGTGACGATAGCTGAAAACTGTACGATAAACGGTACGCTGAGGG 18283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 CCGGGACGCTCAGTAATGTGACGATAGCTGAAAACTGTACGATAAACGGTACGCTGAGGG 58 Query 18284 CGGAAAAAATCGTCGGGGACATTGTAAAGGCGGCGAGCGCGGCTTTTCCGCGCCAGCG 18341 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 57 CGGAAAAAATCGTCGGGGACATTGTAAAGGCGGCGAGCGCGGC-TTTCCGCGCCAGCG 1 >seq5240 Length=752 Score = 1357 bits (1504), Expect = 0.0 Identities = 752/752 (100%), Gaps = 0/752 (0%) Strand=Plus/Minus Query 30011 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 30070 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 30071 CTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGTGTTACCAATTCATGGAAAAGG 30130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGTGTTACCAATTCATGGAAAAGG 633 Query 30131 TCTGCGTCAAATCCCCAGTCGTCATGCATTGCCTGCTCTGCCGCTTCACGCAGTGCCTGA 30190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632 TCTGCGTCAAATCCCCAGTCGTCATGCATTGCCTGCTCTGCCGCTTCACGCAGTGCCTGA 573 Query 30191 GAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGC 30250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 572 GAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGC 513 Query 30251 AACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGC 30310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 512 AACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGC 453 Query 30311 CACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTG 30370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 452 CACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTG 393 Query 30371 CTGTGTTGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTC 30430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 392 CTGTGTTGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTC 333 Query 30431 ATTAATCCCTGAACTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAAAAAGGAG 30490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 332 ATTAATCCCTGAACTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAAAAAGGAG 273 Query 30491 CCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCATCGTTCCTTAAAGACGCCGTTTAA 30550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 CCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCATCGTTCCTTAAAGACGCCGTTTAA 213 Query 30551 CATGCCGATTGCCAGGCTTAAATGAGTCGGTGTGAATCCCATCAGCGTTACCGTTTCGCG 30610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 212 CATGCCGATTGCCAGGCTTAAATGAGTCGGTGTGAATCCCATCAGCGTTACCGTTTCGCG 153 Query 30611 GTGCTTCTTCAGTACGCTACGGCAAATGTCATCGACGTTTTTATCCGGAAACTGCTGTCT 30670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 152 GTGCTTCTTCAGTACGCTACGGCAAATGTCATCGACGTTTTTATCCGGAAACTGCTGTCT 93 Query 30671 GGCtttttttGATTTCAGAATTAGCCTGACGGGCAATGCTGCGAAGGGCGTTTTCCTGCT 30730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92 GGCTTTTTTTGATTTCAGAATTAGCCTGACGGGCAATGCTGCGAAGGGCGTTTTCCTGCT 33 Query 30731 GAGGTGTCATTGAACAAGTCCCATGTCGGCAA 30762 |||||||||||||||||||||||||||||||| Sbjct 32 GAGGTGTCATTGAACAAGTCCCATGTCGGCAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150513663647880