Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019768.1 Length=41468 Score E Sequences producing significant alignments: (Bits) Value seq13611 711 0.0 seq5240 129 2e-25 seq10087 89.7 1e-13 >seq13611 Length=919 Score = 711 bits (788), Expect = 0.0 Identities = 624/769 (81%), Gaps = 16/769 (2%) Strand=Plus/Plus Query 38623 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGGAATCAATAATCAACGTAAGGCGTTCCTCG 38682 |||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 38683 ATATGCTGGCATGGTCAGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 38742 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 38743 ATGACGTCATTGTTGGCGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 38802 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 38803 TCACGCTAAACCCGAAACTCAAATCAACAGCCGCCGGACGCTACCAGCTTCTTTCCCGTT 38862 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 38863 GGTGGGATGCCTATCGTAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGCCAGGATG 38922 ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| | Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 38923 CGGTGGCGTTACAGCAGATTAAAGAACGCGGCGCGCTGCCGCTGATTGATCGGGGTGATA 38982 | ||||| || ||||||||||| || || ||||| | || |||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 38983 TTCGTCAGGCTATTGATCGTTGCAGCAATATTTGGGCTTCATTGCCCGGTGCTGGCTACG 39042 | |||||||| || || |||||||||||||| ||||||||| |||| || ||||| || | Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 39043 GTCAGTATGAACACAAGATCGATAGTCTGATTGCCAAATTCAAAGAAGCTGGCGGGGTGG 39102 |||||| || || ||| || || |||||||| |||||||||||||| ||||| || Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 39103 TTAATGAAACTTCGCTATAAGCTG-GTTATTTCTGCTTTCCTCCTGACT--TTATTCGGT 39159 | | || | | ||| ||| | || | | | || |||| || |||| | Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGC-GATTATCTCCGCTCTGGTTATCTGCA 539 Query 39160 TCTCTCGTCTG---GTCA------GCTAATCATTACCACAATAAAGCCATTGAATACAAA 39210 || ||||||| |||| | ||||||||||| |||| |||||| |||||| Sbjct 540 TC-ATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAA 598 Query 39211 AAACAGCGCGACGAAAACGCTATGGCATTAGATTCGGCTATGGCGACGATCTCTGATATG 39270 ||||||||| |||| || | | | | | ||| | ||| | || |||| ||| Sbjct 599 GCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATG 658 Query 39271 CAGAAGCGTCAACGTGACGTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGAT 39330 |||| |||||| ||||| || || | |||||||| | ||| || |||||| | |||||| Sbjct 659 CAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGAT 718 Query 39331 GCTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 39378 ||||| || || || || ||| |||| ||||||| | ||||||||| Sbjct 719 GCTAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq5240 Length=752 Score = 129 bits (142), Expect = 2e-25 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 24755 CCTACCGTTAGCGCAATTTCCTCGTTCTCCTGGTCACGGCGTTTGATGTATTGCTGGTTT 24814 ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 24815 CTTTCCCGTTCATCCAGCA 24833 ||||||||||||||||||| Sbjct 692 CTTTCCCGTTCATCCAGCA 674 >seq10087 Length=869 Score = 89.7 bits (98), Expect = 1e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 32052 TCACAAAGAAAAAATCCCCGGCCGCCACCGAGGATTTTAAGCAAATTGATATGCAATTCT 32111 |||| || |||||| |||||| || |||||| || | | ||||| | ||| | |||| Sbjct 571 TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT 512 Query 32112 GAGGGAATTACTGGATCAATCCACAGGAGTAATTATGACAAA 32153 |||| ||||||||||| ||| |||||||| ||||||||||| Sbjct 511 GAGGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132529564841700