Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_019769.1 Length=38964 Score E Sequences producing significant alignments: (Bits) Value seq13611 1034 0.0 seq10087 125 2e-24 >seq13611 Length=919 Score = 1034 bits (1146), Expect = 0.0 Identities = 690/767 (90%), Gaps = 23/767 (3%) Strand=Plus/Plus Query 34834 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGGAATCAATAATCAACGTAAGGCGTTCCTCG 34893 |||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 34894 ATATGCTGGCATGGTCAGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 34953 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 34954 ATGACGTCATTGTAGGCGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 35013 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 35014 TCACGCTAAACCCCAAACTCAAATCAACAGCAGCCGGACGTTACCAGCTTCTTTCCCGTT 35073 ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 35074 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGCCAGGACG 35133 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 35134 CTGTGGCATTGCAGCAGATTAAAGAGCGTGGCGCTTTGCCGATGATTGATCGTGGTGATA 35193 |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 35194 TTCGTCAGGCAATTGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 35253 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 35254 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAGGCTGGCGGAACGG 35313 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 35314 TCAGAGAGATTGAGGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 35373 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 35374 CATCGTTTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATCTCCTACAAAGA 35433 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 35434 GCAGCGCGATAAA---GCCACA----TCCATC--------------ATCGCTGATATGCA 35472 |||||||| ||| |||| | | | | || |||| ||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 35473 GAAGCGTCAACGTGATGTAGCAGAGCTCGACGCCAGATACACAAAGGAGCTTGCTGATGC 35532 || |||||| |||||||| || | |||||| || | |||||| |||||| | |||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 35533 TAACGC-GACTATCGAAAGCCTCCGTGCTGATGTTTCTGCTGGTCGT 35578 ||| || || || || || |||| ||||||| | ||||||||| Sbjct 721 TAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 125 bits (138), Expect = 2e-24 Identities = 69/69 (100%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 28238 ACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATAC 28297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869 ACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATAC 810 Query 28298 TTACATATG 28306 ||||||||| Sbjct 809 TTACATATG 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124519571349940