Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq385 102 9e-17 seq626 95.1 1e-14 >seq385 Length=67670 Score = 102 bits (112), Expect = 9e-17 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTA--TTGGTAAT 139916 ||||||||| || |||||| |||| ||| | |||||||| ||||| | || || Sbjct 10044 CATTGCCTCAGCACATGCAGTAGCTTGATCCAGAAGAGATGCATTTGCCAAATTCATAG- 9986 Query 139917 CCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGAT 139976 |||| | ||| | || | | || |||| || | | || | | || |||||| Sbjct 9985 -CTGTCAAGTCTATAATCATGGACTGAAAATTCAACAGGGACTCTAGACGGCCTTGAGAT 9927 Query 139977 ATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGC 140036 || ||||| || || |||||||| | |||||||| ||||||||| | |||||| || Sbjct 9926 ATTTCAGCCTGGTAAGGAGTGTATGGGGTGTACCATGCAGGATTCTCTATAACGTTACGA 9867 Query 140037 TGTATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 |||| || || ||||| || | | ||||||||||||| || || Sbjct 9866 AGTATTACAGGTGGTGTGATCGATTCATAGTATCCTTGCCCAAT 9823 >seq626 Length=462296 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| || |||||| |||| ||| | |||||||| ||||| | | | Sbjct 443867 CATTGCCTCAGCACATGCAGTAGCTTGATCAAGAAGAGATGCATTTGCCAAATCCATAGC 443808 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| | ||| | || | | || |||| || | | || | | || |||||||| Sbjct 443807 TGTCAAGTCTATAATCATGGACTGAAAATTCAACAGGGACTCTAGACGGCCTTGAGATAT 443748 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||| || | |||||||| | |||||||| ||||||||| | |||||| || | Sbjct 443747 TTCAGCCTGGAAAGGAGTGTATGGGGTGTACCATGCAGGATTCTCGATAACGTTACGAAG 443688 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 ||| || || ||||| || | | ||||||||||||| || || Sbjct 443687 TATTACAGGTGGTGTGATCGATTCATAGTATCCTTGCCCAAT 443646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578784930527400