Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq594 140 1e-27 >seq594 Length=267672 Score = 140 bits (154), Expect = 1e-27 Identities = 557/869 (64%), Gaps = 17/869 (2%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTC 155644 |||| || || || || || ||||| ||| | | | | ||||| |||| |||||| Sbjct 92624 CAATGGAGGCAAGGTTGCACACCGCGACCTCATC--CCTTGATGTATACTCTATAATCTC 92681 Query 155645 ACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACA 155704 ||| ||||| || | ||||||| || | ||||||||| || ||||||| |||||| Sbjct 92682 TGTGCAAAGGTTCGAGCACTTGATGACTCCAACATTCTTCTGATTTGATTTACGGTTACA 92741 Query 155705 AGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAG 155764 || |||||||| || ||| | ||| || || |||||||| | || || || | Sbjct 92742 TGCGTCCTTGTAAAGCATGAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATGGCAAA 92801 Query 155765 CCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATA 155824 ||| ||| |||| | | |||| | || ||| ||||| | || Sbjct 92802 CCACAGGGATTGGGCCTGCACGGTCTTGACGCCTCGATTCTCCCTTTCATACCCCTCGTA 92861 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 | | || |||| ||||| || || ||||||||||| || | ||| ||| | Sbjct 92862 TAACTTTTTAAAATCATCACCATAGCAGTCACTCAGTCCTGGCGCCGTATGCGGGTCCAT 92921 Query 155885 CAGCGACCAAATTTTATTACCGATT-ACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 ||||| ||| || | | || ||||||||||| |||| ||| ||||| || Sbjct 92922 CAGCGTCCAC-TTGCCTCCGCTCTTCACACGCTCCATGAATAGGTCAGGAATCCAAAGAG 92980 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT---CTTCCGTAGCTCTA 156000 | || || | || | ||| | || || | || ||| |||| || | Sbjct 92981 CGTAAAACAAATCTCGCGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAG----A 93036 Query 156001 AGAATTCCTCA-ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059 |||| | |||||| ||| ||||| | || || ||||| || || | | Sbjct 93037 AGAAAATTAAATATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGC 93096 Query 156060 TTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 ||||||||| ||||||||||| || || || ||||| | |||| |||||| || | | Sbjct 93097 TTGCCACCCCCCTGATCTACATAGCGCGCCGTGTTATTCCAAACACGTAGCATCGGTACA 93156 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 | || || || |||||| || || ||| | || || |||| | ||| || Sbjct 93157 AGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAGCGGATATTGTGC 93216 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 | || | ||||| ||||| | ||||| || ||||||| ||| | |||| Sbjct 93217 ACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCA 93276 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGT 156296 |||| || |||||| || || ||| | | ||| | || ||||| | |||||| Sbjct 93277 TAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGA 93336 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 || ||||| || ||||||| ||| ||||| ||||| | || | | | ||||||| Sbjct 93337 AAAGGCGTTCCGGCATTGAATAATGTCGGTGTGGCATGTGTGAAGTCCCCAAGAGACATA 93396 Query 156357 TAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTC 156416 | || ||||||||||| | ||| | || |||||||||| | || ||| | | Sbjct 93397 TGGTCATATGTCTCCTTTACGCGCTCCATATCTTCACCGTGAATACCAAGAGCGACGCGC 93456 Query 156417 ATCCACATATGCTGAGGACGCTCTACAAT 156445 | |||| ||||| |||||||| |||| Sbjct 93457 AAAAACATTTGCTGCGGACGCTCAGCAAT 93485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471261393229815