Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq516 127 2e-23 seq278 118 1e-20 seq12641 105 8e-17 >seq516 Length=139422 Score = 127 bits (140), Expect = 2e-23 Identities = 216/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || | |||||| ||||| |||||||| ||||| ||| | |||||| | || | Sbjct 84579 CCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTACCT 84638 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || ||| |||||||||| ||||||||||| ||| || || || || ||||| | Sbjct 84639 GTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCAA 84698 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || ||||| ||||||||||||||| ||| | ||| | | | | |||||| Sbjct 84699 AGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTCTCCCAGTCCG 84758 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | ||| ||| | ||| | ||||| | |||||||| | ||||| | |||| Sbjct 84759 CCAAGTCACTGCTCAAGTCGATTTCCTCCACCGTCCAGATGCTGCTCTCGGATTCCTTGT 84818 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGC 869930 || ||| ||| | | ||||| ||| || |||| || | |||| || || |||| Sbjct 84819 ACTTCTTCCAGATATCGTGGTACTTGATCGGAAAGATCACGTAACGGTCAGGATTCTCGC 84878 Query 869931 GCAACAGGGGTTC 869943 |||| || ||||| Sbjct 84879 GCAAAAGCGGTTC 84891 >seq278 Length=37984 Score = 118 bits (130), Expect = 1e-20 Identities = 214/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || | |||||| ||||| |||||||| ||||| ||| | |||||| | || | Sbjct 24172 CCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTACCT 24231 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || ||| |||||||||| ||||||||||| ||| || || || || ||||| | Sbjct 24232 GTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCAA 24291 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||||||| ||| | ||| | | | | |||||| Sbjct 24292 AGAACGCTAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTCTCCCAGTCCG 24351 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | ||| ||| | || | ||||| | |||||||| | |||||| | |||| Sbjct 24352 CCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCCAGATGCTGCTCTCGGCTTCCTTGT 24411 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGC 869930 || ||| ||| | | || || ||| || |||| || | |||| || || |||| Sbjct 24412 ACTTCTTCCAGATATCATGATACTTGATCGGAAAGATCACGTAACGGTCAGGATTCTCGC 24471 Query 869931 GCAACAGGGGTTC 869943 |||| || ||||| Sbjct 24472 GCAAAAGCGGTTC 24484 >seq12641 Length=906 Score = 105 bits (116), Expect = 8e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || | |||||| ||||| |||||||| ||||| ||| | |||||| | || | Sbjct 244 CCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTACCT 185 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || ||| |||||||||| ||||||||||| ||| || || || || ||||| | Sbjct 184 GTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCAA 125 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAG 869776 | || || || ||||||||||||||| Sbjct 124 AGAACGCTAGCACGTGCTTGATAAAG 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104718702174915