Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq516 102 2e-16 seq12641 96.9 8e-15 seq278 96.9 8e-15 >seq516 Length=139422 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 ||||| || ||||| || |||||||| |||||||| || | |||||||| |||| Sbjct 84429 CTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTCTTC 84370 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||| ||||||||||| ||||||| || || | || ||| || |||||||| | Sbjct 84369 TGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGT 84310 Query 131981 GATGAAGCATTGCATACTGAATTTGC 132006 ||||||| ||||| || || ||||| Sbjct 84309 GATGAAGGCTTGCACACGGACTTTGC 84284 >seq12641 Length=906 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 ||||| || ||||| || |||||||| |||||||| || | |||||||| | || Sbjct 394 CTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTC 453 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||| ||||||||||| ||||||| || || | || ||| || |||||||| | Sbjct 454 TGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGT 513 Query 131981 GATGAAGCATTGCATACTGAATTTGC 132006 ||||||| ||||| || || ||||| Sbjct 514 GATGAAGGCTTGCACACGGACTTTGC 539 >seq278 Length=37984 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 ||||| || ||||| || |||||||| |||||||| || | |||||||| | || Sbjct 24022 CTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTC 23963 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||| ||||||||||| ||||||| || || | || ||| || |||||||| | Sbjct 23962 TGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGT 23903 Query 131981 GATGAAGCATTGCATACTGAATTTGC 132006 ||||||| ||||| || || ||||| Sbjct 23902 GATGAAGGCTTGCACACGGACTTTGC 23877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186364297879695