Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq5240 149 3e-31 >seq5240 Length=752 Score = 149 bits (164), Expect = 3e-31 Identities = 177/237 (75%), Gaps = 11/237 (5%) Strand=Plus/Minus Query 60834 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 60893 ||||||||| |||||||||||| |||||||||| | ||||| ||||||||| || ||| Sbjct 561 GCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAA 502 Query 60894 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 60953 || || || || |||| || |||||| || ||||||||||||||||||||||| ||| Sbjct 501 GTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 442 Query 60954 CAATGAGTAGCAGATGGGGCAT--TACTTTCGGATTTGTATTT---TTGCAGGGAGAGAT 61008 |||||||| |||||| || | | || || | |||| |||| | | | Sbjct 441 CAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTG-----T 387 Query 61009 TGCGCTGCAATTCTTCGATTTCAGCGGCATTGTCGATGATATCTGCCAT-TTTCCTT 61064 ||||||| |||||||| ||||| | || || ||||| |||||||| |||| || Sbjct 386 TGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 330 Score = 147 bits (162), Expect = 9e-31 Identities = 86/89 (97%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60237 CCTACCGTAAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 60296 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 60297 CTTTCCCGTTCATCCAGCAGTGCCAGCAC 60325 ||||||||||||||||||||| ||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200439921888700