Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq590 165 9e-36 seq614 116 4e-21 >seq590 Length=263001 Score = 165 bits (182), Expect = 9e-36 Identities = 386/575 (67%), Gaps = 8/575 (1%) Strand=Plus/Minus Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982 ||||| ||||| ||| ||| ||||| ||||| || ||||||||||| || || |||||| Sbjct 236155 GGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGGC 236096 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || || ||| | | || | | | ||| | || | |||| ||| |||||||| Sbjct 236095 CGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAAC 236036 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCG 147102 ||||| || ||||||||||| | || | |||||| ||| ||| || || ||||| | | Sbjct 236035 GGGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATTG 235976 Query 147103 GCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCG 147162 |||||||||||| || | ||||||||| || || ||||| ||||| | Sbjct 235975 CTCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCTC 235916 Query 147163 GGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTCGAT 147221 || ||||| |||| || | || ||| | | || || || || |||| | | ||| | Sbjct 235915 GGATTCCATGCCGTGAATAGCATCCGGC-GATCGTCAGGATTTGTCTTTAGCGTTTCAAC 235857 Query 147222 AACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCT 147281 | | | | || ||||| ||||| || | ||||| | | || ||| Sbjct 235856 GATTGCCTTGATTTGATCCACACCCTGTCCGTCATAGTTGGCATCATGGTGTGTGTAGGC 235797 Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTC--GCCGGGCTTTCTG 147339 ||| |||||||| | |||||| |||||||| || || || ||||| | | | || Sbjct 235796 GGCACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGGTCCATCTCCTCGTACTC 235737 Query 147340 TGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCAC 147398 || ||| ||| || | | | |||||| || | || |||| | ||||||| ||| || Sbjct 235736 TGTGAG--GCCACGACTG-TCAAGAAACGCGCGCGAGCCGTTGTCGTCCCATATGTGGAC 235680 Query 147399 TCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTC 147458 ||||||| | | || || | | || |||||| | ||||| ||||| ||||| Sbjct 235679 TCCCTTGTCACTTAACTTTTTGGCATATGTTTCGCCCCGTAGAAACCACAGCAGTTCCTC 235620 Query 147459 CAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCA 147493 | || || | |||||| |||| ||| || |||| Sbjct 235619 GCACACACCGCGCCAAAAAACCCGCTTCGTTGTCA 235585 >seq614 Length=348591 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982 ||||| ||||| ||| ||| ||||| ||||| || ||||||||||| || || |||||| Sbjct 130233 GGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGGC 130292 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || || ||| | | || | | | ||| | || | |||| ||| |||||||| Sbjct 130293 CGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAAT 130352 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCG 147102 ||||| || ||||||||||| | || | |||||| ||| ||| || || ||||| | | Sbjct 130353 GGGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGAAAGTTCCCCATTG 130412 Query 147103 GCCACGTAAAACTG 147116 |||||||||||| Sbjct 130413 CTCACGTAAAACTG 130426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583272875268000