Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq516 179 5e-39 seq12641 176 6e-38 seq278 176 6e-38 >seq516 Length=139422 Score = 179 bits (198), Expect = 5e-39 Identities = 280/394 (71%), Gaps = 11/394 (3%) Strand=Plus/Minus Query 1455885 TTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCT 1455944 || ||||||||||| || || || ||| ||||| || ||||| || ||| |||||||| Sbjct 84723 TTTATCAAGCACGTGCTGGCGTTCTTT-GCCGCAAGTGATGGAATTGTGCTGGAGAACCT 84665 Query 1455945 GGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCA 1456004 ||| || || |||| || || || | || |||| || | || ||||||||||| Sbjct 84664 GGCGCAGCGGTTCATGACGGAAGTACAGGTACCGGAGGTGCGCTGCTTCTACGGGTTCCA 84605 Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 ||| ||||| || ||| | || || ||||| |||||| | || | || || ||| ||| Sbjct 84604 GATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGTTGTTGGATACGTACATCAC 84545 Query 1456065 GGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCA--TCGACACGGTGCCGTCGGTGAGG 1456122 || ||| |||||||||| | | || | ||||| |||||| | |||| | | Sbjct 84544 AGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACA--ATTCCGTGCATCCAG 84487 Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||||||| |||||||||| ||||||| | || || ||| |||||||| | Sbjct 84486 AAAAAGGCCAACTGGGCGATTCGGTGGATCCGC-AGCAGCAGTTCG----TTTGCCGAAC 84432 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | |||||| || || || || || || || || ||| ||||| || ||| Sbjct 84431 GCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTCT 84372 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | ||||| |||||||| || || |||||||| || Sbjct 84371 TCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCT 84338 >seq12641 Length=906 Score = 176 bits (194), Expect = 6e-38 Identities = 279/394 (71%), Gaps = 11/394 (3%) Strand=Plus/Plus Query 1455885 TTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCT 1455944 || ||||||||||| || || || ||| ||||| || ||||| || ||| |||||||| Sbjct 100 TTTATCAAGCACGTGCTAGCGTTCTTT-GCCGCAAGTGATGGAATTGTGCTGGAGAACCT 158 Query 1455945 GGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCA 1456004 ||| || || |||| || || || | || |||| || | || ||||||||||| Sbjct 159 GGCTCAGCGGTTCATGACGGAAGTACAGGTACCGGAGGTGCGCTGCTTCTACGGGTTCCA 218 Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 ||| ||||| || ||| | || || ||||| |||||| | ||| | || || ||| ||| Sbjct 219 GATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCAC 278 Query 1456065 GGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCA--TCGACACGGTGCCGTCGGTGAGG 1456122 || ||| |||||||||| | | || | ||||| |||||| | |||| | | Sbjct 279 AGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACA--ATTCCGTGCATCCAG 336 Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||||||| |||||||||| ||||||| | || || ||| ||||| || | Sbjct 337 AAAAAGGCCAACTGGGCGATTCGGTGGATCCGC-AGCAGCAGTTCG----TTTGCAGAAC 391 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | |||||| || || || || || || || || ||| ||||| || | | Sbjct 392 GCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGT 451 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | ||||| |||||||| || || |||||||| || Sbjct 452 TCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCT 485 >seq278 Length=37984 Score = 176 bits (194), Expect = 6e-38 Identities = 279/394 (71%), Gaps = 11/394 (3%) Strand=Plus/Minus Query 1455885 TTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCT 1455944 || ||||||||||| || || || ||| ||||| || ||||| || ||| |||||||| Sbjct 24316 TTTATCAAGCACGTGCTAGCGTTCTTT-GCCGCAAGTGATGGAATTGTGCTGGAGAACCT 24258 Query 1455945 GGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCA 1456004 ||| || || |||| || || || | || |||| || | || ||||||||||| Sbjct 24257 GGCTCAGCGGTTCATGACGGAAGTACAGGTACCGGAGGTGCGCTGCTTCTACGGGTTCCA 24198 Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 ||| ||||| || ||| | || || ||||| |||||| | ||| | || || ||| ||| Sbjct 24197 GATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCAC 24138 Query 1456065 GGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCA--TCGACACGGTGCCGTCGGTGAGG 1456122 || ||| |||||||||| | | || | ||||| |||||| | |||| | | Sbjct 24137 AGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACA--ATTCCGTGCATCCAG 24080 Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||||||| |||||||||| ||||||| | || || ||| ||||| || | Sbjct 24079 AAAAAGGCCAACTGGGCGATTCGGTGGATCCGC-AGCAGCAGTTCG----TTTGCAGAAC 24025 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | |||||| || || || || || || || || ||| ||||| || | | Sbjct 24024 GCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGT 23965 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | ||||| |||||||| || || |||||||| || Sbjct 23964 TCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCT 23931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174966353038190