Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq10087 1480 0.0 seq5240 778 0.0 seq13611 331 2e-86 >seq10087 Length=869 Score = 1480 bits (1640), Expect = 0.0 Identities = 846/869 (97%), Gaps = 1/869 (0%) Strand=Plus/Minus Query 30850 ACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATAC 30909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869 ACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATAC 810 Query 30910 TTACATATGGTTCGTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCGTTGCTT 30969 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 809 TTACATATGGTTCGTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCGTTGCTT 750 Query 30970 AACAAAATCGCAATGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGCGTTGATAAGTCG 31029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 749 AACAAAATCGCAATGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGCGTTGATAAGTCG 690 Query 31030 CAGATCAGCAGGTGGAAGAGGGACTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTT 31089 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 689 CAGATCAGCAGGTGGAAGAGGGACTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTT 630 Query 31090 GAATGGGGGGTCGTTGACGACGACATGGCTCGATTGGCGCGACAAGTTGCTGCGATTCTC 31149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 629 GAATGGGGGGTCGTTGACGACGACATGGCTCGATTGGCGCGACAAGTTGCTGCGATTCTC 570 Query 31150 ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA 31209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 569 ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA 510 Query 31210 GGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAATACAGCAAAAATACTCAACT 31269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 509 GGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAATACAGCAAAAATACTCAACT 450 Query 31270 TCGGCAGAGGTAACTTTGCCGGACAGGAGCGTAATGTGGCAGATCTCGATGATGGTTACG 31329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 449 TCGGCAGAGGTAACTTTGCCGGACAGGAGCGTAATGTGGCAGATCTCGATGATGGTTACG 390 Query 31330 CCAGACTATCAAATATGCTGCTTGAGGCTTATTCGGGCGCAGATCTGACCAAGCGACAGT 31389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 389 CCAGACTATCAAATATGCTGCTTGAGGCTTATTCGGGCGCAGATCTGACCAAGCGACAGT 330 Query 31390 TTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTGGAATAAACCAATGGACAGAA 31449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 TTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTGGAATAAACCAATGGACAGAA 270 Query 31450 TCACCGATTCTCAACTTAGCGAGATTACAAAGTTACCCGTCAAACGGTGCAATGAAGCCA 31509 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 269 TCACCGATTCTCAACTTAGCGAGATTACAAAGTTACCTGTCAAACGGTGCAATGAAGCCA 210 Query 31510 AGTTAGAACTCGTCAGAATGAATATTATCAAGCAGCAAGGCGGCATGTTTGGACCAAATA 31569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 209 AGTTAGAACTCGTCAGAATGAATATTATCAAGCAGCAAGGCGGCATGTTTGGACCAAATA 150 Query 31570 AAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAAANNNNNNNNNNNNNNNNNNNN 31629 |||||||||||||||||||||||||||||||||||||||| Sbjct 149 AAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAAAATCCCCTAAAACGAGGGATA 90 Query 31630 NAACATCCCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGGACACAAAAGACACTA 31689 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89 AAACATCCCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGGACACAAAAGACACTA 30 Query 31690 TTACaaaag-aaaaaagaaaaGATTATTC 31717 ||||||||| ||||||||||||||||||| Sbjct 29 TTACAAAAGAAAAAAAGAAAAGATTATTC 1 >seq5240 Length=752 Score = 778 bits (862), Expect = 0.0 Identities = 469/493 (95%), Gaps = 1/493 (0%) Strand=Plus/Minus Query 23002 TAAGTTCGATCTCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAACAGCCAGGCGTC 23061 ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 533 TAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTC 474 Query 23062 TTCGCTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATACAGTCTGGTAGT 23121 |||| ||||||||||||||||||||||||||||||||||| || |||| || ||||| || Sbjct 473 TTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGT 414 Query 23122 TCAGACGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCGATTTCTGATGCTGAAT 23181 |||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 413 TCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTCTGATGCTGAAT 354 Query 23182 CAATGATGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACGCTTGAGGGTGA 23241 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 353 CAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACGCTTGAGGGTGA 294 Query 23242 ATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCACCG 23301 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 293 ATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCATCG 234 Query 23302 TTCCTTAAAGACGCCGTTTAACATACCGATTGCCAGACTTAAGTGAGTCGGTGTGAATCC 23361 |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 233 TTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTCGGTGTGAATCC 174 Query 23362 CATCAGCGTTACCGTTTCGCGGTGCTTCTTTAGTACGCTACGGCAAATGTCATTGACGTT 23421 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 173 CATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATGTCATCGACGTT 114 Query 23422 TTTATCCGGAAACTGCTGTCTGGCTT-TTTTGATTTCATAATTAGCCTGACGGGCAATGC 23480 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 113 TTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTGACGGGCAATGC 54 Query 23481 TGCGAAGGGCGTT 23493 ||||||||||||| Sbjct 53 TGCGAAGGGCGTT 41 >seq13611 Length=919 Score = 331 bits (366), Expect = 2e-86 Identities = 312/397 (79%), Gaps = 23/397 (6%) Strand=Plus/Plus Query 36721 ATGAGTAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 36780 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 556 Query 36781 TGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAGAACAGCGCGACAAA--- 36837 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 557 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 616 Query 36838 GCCACAT------------CCATC------ATCGCTGACATGCAGAAGCGTCAACATGAT 36879 |||| | | | | || |||||||||||| |||||| | |||| Sbjct 617 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGAT 676 Query 36880 GTAGCTGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 36938 || |||| ||||| || | |||||| |||||| | ||||||||||| || || || || Sbjct 677 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAAT-GA 735 Query 36939 AAGTCTTCGTGCTGATGTTTCTGCTGGTCGTAAGTGGCTGCACGTCAAAGCAGTCTGTCC 36998 ||| |||| ||||||| | ||||||||| || ||||| ||||||||||||||| Sbjct 736 TGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCA 795 Query 36999 GGACAAGCATAAAACCACCGCCGCCTCCGGCGTGGATGATGCTTCCAGCCCCAGACTTAC 37058 | || | || ||||| ||||||||||||||||| |||| || |||| |||| | Sbjct 796 GTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGC 855 Query 37059 TGACACCGCTCAACGGGATTATTTCGTTCTCAGAGAG 37095 ||||||||| |||||||||||||| ||||||||| Sbjct 856 AGACACCGCTGAACGGGATTATTTCACCCTCAGAGAG 892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122680215815690