Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12641 141 7e-29 seq278 141 7e-29 seq516 132 4e-26 >seq12641 Length=906 Score = 141 bits (156), Expect = 7e-29 Identities = 256/372 (69%), Gaps = 2/372 (1%) Strand=Plus/Plus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| || |||| || | || || || || ||||| || |||||||| || || || Sbjct 178 GAAGTACAGGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATTGAGAACGTT 237 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 |||||||||| ||| | ||| | ||||||||||||| |||| | | |||||| | Sbjct 238 CATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGGAGGAGAAGGAC 297 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || |||| | || || ||| | || ||| || | | || || ||||||| | Sbjct 298 CGCATGTTGCACGCCATTTCGACAATTCCGTGC-ATCCAGAAAAAGGCCAACTGGGCGAT 356 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | ||||| | ||| |||| |||||| ||||| || ||||| | ||||| Sbjct 357 TCGGTGGATCCGCAGCAGCAGTTCGTTTGCAGAACGCCTTGTTGCCTTTGCGGCGGTGGA 416 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| ||||||||||| || || || || | || ||| ||||||| || ||| |||| Sbjct 417 AGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAAGAAGCGTGGTCTGAT 476 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTT 44274 ||| ||| ||||||| ||||| | || |||||||||||||| || || || Sbjct 477 GCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTT 536 Query 44275 TGCTTGCTTGTT 44286 ||| ||| |||| Sbjct 537 TGCGTGCCTGTT 548 >seq278 Length=37984 Score = 141 bits (156), Expect = 7e-29 Identities = 256/372 (69%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| || |||| || | || || || || ||||| || |||||||| || || || Sbjct 24238 GAAGTACAGGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATTGAGAACGTT 24179 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 |||||||||| ||| | ||| | ||||||||||||| |||| | | |||||| | Sbjct 24178 CATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGGAGGAGAAGGAC 24119 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || |||| | || || ||| | || ||| || | | || || ||||||| | Sbjct 24118 CGCATGTTGCACGCCATTTCGACAATTCCGTGC-ATCCAGAAAAAGGCCAACTGGGCGAT 24060 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | ||||| | ||| |||| |||||| ||||| || ||||| | ||||| Sbjct 24059 TCGGTGGATCCGCAGCAGCAGTTCGTTTGCAGAACGCCTTGTTGCCTTTGCGGCGGTGGA 24000 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| ||||||||||| || || || || | || ||| ||||||| || ||| |||| Sbjct 23999 AGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAAGAAGCGTGGTCTGAT 23940 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTT 44274 ||| ||| ||||||| ||||| | || |||||||||||||| || || || Sbjct 23939 GCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTT 23880 Query 44275 TGCTTGCTTGTT 44286 ||| ||| |||| Sbjct 23879 TGCGTGCCTGTT 23868 >seq516 Length=139422 Score = 132 bits (146), Expect = 4e-26 Identities = 254/372 (68%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| || |||| || | || || || || ||||| || |||||||| || || || Sbjct 84645 GAAGTACAGGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATTGAGAACGTT 84586 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 |||||||||| ||| | || | ||||||||||||| |||| | | |||||| | Sbjct 84585 CATTCGGAAACATACTCGGTGTTGTTGGATACGTACATCACAGATACGGAGGAGAAGGAC 84526 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || |||| | || || ||| | || ||| || | | || || ||||||| | Sbjct 84525 CGCATGTTGCACGCCATTTCGACAATTCCGTGC-ATCCAGAAAAAGGCCAACTGGGCGAT 84467 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | ||||| | ||| |||| ||||| ||||| || ||||| | ||||| Sbjct 84466 TCGGTGGATCCGCAGCAGCAGTTCGTTTGCCGAACGCCTTGTTGCCTTTGCGGCGGTGGA 84407 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| ||||||||||| || || || || | || ||| ||||||| || ||| |||| Sbjct 84406 AGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTCTTCTGGCTAAAGAAGCGTGGTCTGAT 84347 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTT 44274 ||| ||| ||||||| ||||| | || |||||||||||||| || || || Sbjct 84346 GCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTT 84287 Query 44275 TGCTTGCTTGTT 44286 ||| ||| |||| Sbjct 84286 TGCGTGCCTGTT 84275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397313126367475