Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq516 107 2e-18 seq514 86.0 8e-12 seq325 86.0 8e-12 >seq516 Length=139422 Score = 107 bits (118), Expect = 2e-18 Identities = 302/455 (66%), Gaps = 9/455 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || |||||| ||||||||||||||| ||||| || | || || |||||||| Sbjct 83993 TACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCATA 84052 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 ||||| ||||| ||||| | ||| | || |||| | || || ||| Sbjct 84053 AAGTCGAATGGGTTCTTTGAGTTGTAGTGACGTTCGTTGCCAAGTGCCACCAGCAGCCGA 84112 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-ACA 122549 |||| |||| |||| |||||| |||||| || | |||||| || | || ||| Sbjct 84113 TCCGCCACAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGCCGCACA 84172 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 |||| ||||| |||| ||| | |||||| || ||||| | || || | Sbjct 84173 -GGGATGGCGTCACAGATAAACTCACGCTCAATATCCACCGCACTGCAAATAATCTCGCG 84231 Query 122610 GATAGTTTCGGTAGTGGGTCTATTACGCAA---AGTCTT-GAAGAGCTC-CACGGCAAAC 122664 ||| || | | | || | | ||| ||| || | | | | |||| |||| Sbjct 84232 AATACGCTCCTTTG-GTAACTTGTTCACAATGTAGTTTTCGTACAACAGGCACG-CAAAG 84289 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| ||| | || ||||| || || || |||||||| ||| || || ||||| Sbjct 84290 TCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCCGGGCATC 84349 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 ||||| |||||||| | ||| | | || ||||| || ||||| ||||| ||||| ||| Sbjct 84350 AGACCACGCTTCTTTAGCCAGAAGAGCGCACAGAAGGAGCCGGAAAAGAAAATACCTTCC 84409 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || |||||| |||| |||||||||||| || || Sbjct 84410 ACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGA 84444 >seq514 Length=138191 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 86954 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 87013 Query 145344 GGTAGGA 145350 ||||||| Sbjct 87014 GGTAGGA 87020 >seq325 Length=50015 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 2721 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 2780 Query 145344 GGTAGGA 145350 ||||||| Sbjct 2781 GGTAGGA 2787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627800452452000