Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq594 226 4e-54 seq12641 149 8e-31 seq278 149 8e-31 seq516 134 2e-26 >seq594 Length=267672 Score = 226 bits (250), Expect = 4e-54 Identities = 687/1054 (65%), Gaps = 17/1054 (2%) Strand=Plus/Plus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||| ||||| |||||||| || || | | ||||||| | | ||||| || | || || Sbjct 91752 GTAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTG 91811 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | |||||| |||||| || || |||| ||||| || || ||||| || Sbjct 91812 GCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGGTCAATGAACTTGCC 91871 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || ||| | ||||| || || | ||||||| | || ||||||||| | || || Sbjct 91872 ACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATACAG 91931 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||| | |||| ||| || || |||||||| | || ||| | | | || Sbjct 91932 CTCCTTGAGGTCATTTGGAATGCCCCTAATATTTTGCACCGAGCCATTG---TAGGCAAT 91988 Query 118082 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 118138 || | || ||| || | ||| ||||| ||| |||||||| ||| || | Sbjct 91989 GATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGTA 92048 Query 118139 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 118198 ||| || || ||| ||||||||| || || | || |||||||| | || | Sbjct 92049 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 92108 Query 118199 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 ||||||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 92109 TGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 92167 Query 118258 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT 118317 ||| || | || || | || ||| | | || || | ||| | || ||||| | Sbjct 92168 CCAACAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 92227 Query 118318 CGTAGTTGAGCTTTGTC---TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACG 118374 | || | || | | | || ||||| ||||||||| || ||||| |||| Sbjct 92228 CCCAGCGGCCACTTCGCGGTTTCTGCTCCCACAGATCAAACTGTAGCTGGCCTTGCGACG 92287 Query 118375 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 118434 | || || |||| | |||| || ||||| || ||||| | ||| |||||||| Sbjct 92288 CGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCGCCT 92347 Query 118435 CGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 118494 | | || ||| || || ||||||||||| |||||| | | | ||||| | | Sbjct 92348 CCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTCCTCGCCTCCTGGC 92407 Query 118495 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 118554 | || | || || || ||||| |||||| | ||||| || || | |||| Sbjct 92408 ATGTGAATGGTAGCCGCATCAGGATAAAAGTATCCGCCATTCCTTGCACGCCAATTCCAA 92467 Query 118555 TTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTAT 118611 | || |||| | || |||| | ||| ||| || |||||| || | || Sbjct 92468 TGGGACGATTGAGCTCGTTG--CTTCGGCGCGA-CTCGGGTACAGGATAATGGTTACGAT 92524 Query 118612 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 118671 |||| || | ||| |||||||| ||||||| || |||| |||| ||| | || | Sbjct 92525 CGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAGCCGCTGGTGGT 92584 Query 118672 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 118731 | || | | |||| | || ||| | ||||| || || || || || || |||| Sbjct 92585 CGTAAATTCTTCTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTGCACA 92644 Query 118732 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAA 118791 | | | ||||||| | || ||||||||||| || ||||| | ||| || | ||| | Sbjct 92645 CCGCGACCTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGA 92704 Query 118792 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 118851 || || | ||||| |||||||| || |||||| || ||||||||||||||| | | Sbjct 92705 TGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAG 92764 Query 118852 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 | ||||| ||| | || || | ||| || || Sbjct 92765 GGACGCCCGTTTCCATCTGCGATTCGAGTATGGC 92798 Score = 116 bits (128), Expect = 5e-21 Identities = 285/428 (67%), Gaps = 8/428 (2%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||| ||||| |||||||| || || | | ||||||| | | ||||| || | | Sbjct 87721 CGTAGGTAATACATACCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTC 87780 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | | | | |||||| |||||| || || |||| ||||| || || ||||| Sbjct 87781 AGTTGGCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGGTCAATGAAC 87840 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 || || ||| | ||||| || || | ||||||| | || ||||||||| | Sbjct 87841 TTGCCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGA 87900 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTG 118076 || || | ||| | |||| ||| || || || ||||| | || ||| | | Sbjct 87901 TACAGCTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACCGAGCCATTG---TAG 87957 Query 118077 ACCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | |||| | || ||| || | ||| ||||| ||| |||||||| ||| Sbjct 87958 GCAATGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACA 88017 Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 || | ||| || || ||| ||||||||| || || | || |||||||| | Sbjct 88018 AGGTACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAG 88077 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCAT 118252 || |||||||||||||||||||||| |||||| || || | ||||| || |||||||| Sbjct 88078 GTAAATGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCAT 88136 Query 118253 GGGTGCCA 118260 || |||| Sbjct 88137 TGGAGCCA 88144 >seq12641 Length=906 Score = 149 bits (164), Expect = 8e-31 Identities = 449/675 (67%), Gaps = 44/675 (7%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCCA 129785 || || || ||| |||||| |||||||||||||| || | || ||| || | |||| Sbjct 830 TACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAG--TGAAATCATTTCCA 773 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTG-----AG 129840 |||| || ||||||||||||||||| | || | ||| | || || Sbjct 772 TAAAGTCGAATGGGTTCTTTGAGTTGTAG-----TGACGCTCGTTGCCAAGTGCCACCAG 718 Query 129841 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG 129900 || ||||||| || |||| |||||| |||||| || | |||||| || | || Sbjct 717 CAGCCGATCCGCCACAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAG 658 Query 129901 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGA 129959 ||| |||| | ||| |||||||| | |||||||||||| || | | | Sbjct 657 CCGCACA-GGGATGGAGTCACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATAA 599 Query 129960 TGGCGTGAATGGTCTCCGT-GCCAGGTCTATTGCGCAA---AGTCTTG----AAGAGTTC 130011 | || |||| |||||| | || | | || | ||| ||| || || || Sbjct 598 TCTCGCGAATACGCTCCGTTGGTAGCT-TGTT-CACAATGTAGTTTTCGTACAACAGG-- 543 Query 130012 CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 130071 |||| |||| ||| ||| | || || ||||| |||||||||||||| ||| ||| Sbjct 542 CACG-CAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAG 484 Query 130072 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 130131 || ||||| ||||| |||||||| | |||||| | |||||| || ||||| || ||||| Sbjct 483 CCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAA 424 Query 130132 GATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GGGACTTTGTAT 130190 || || ||||| ||| || |||| || || || ||||| || | | || | || Sbjct 423 AATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTGCGGAT 364 Query 130191 CAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-T 130249 |||| |||||||| | |||||||||| ||| ||||| | ||| || || | Sbjct 363 ----CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGT 308 Query 130250 TCA--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAAT 130307 || | | | ||||||| || | |||| |||||||| |||| | || || | Sbjct 307 GCAACATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGAGT 251 Query 130308 ATGTTTCGCCATGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTC 130365 ||||||| ||| || | ||| |||||| ||| || ||||||| ||||| | || Sbjct 250 ATGTTTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTC 193 Query 130366 GCTTATCTGTACCTC 130380 || |||||| || Sbjct 192 CGGTACCTGTACTTC 178 >seq278 Length=37984 Score = 149 bits (164), Expect = 8e-31 Identities = 449/675 (67%), Gaps = 44/675 (7%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCCA 129785 || || || ||| |||||| |||||||||||||| || | || ||| || | |||| Sbjct 23586 TACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAG--TGAAATCATTTCCA 23643 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTG-----AG 129840 |||| || ||||||||||||||||| | || | ||| | || || Sbjct 23644 TAAAGTCGAATGGGTTCTTTGAGTTGTAG-----TGACGCTCGTTGCCAAGTGCCACCAG 23698 Query 129841 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG 129900 || ||||||| || |||| |||||| |||||| || | |||||| || | || Sbjct 23699 CAGCCGATCCGCCACAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAG 23758 Query 129901 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGA 129959 ||| |||| | ||| |||||||| | |||||||||||| || | | | Sbjct 23759 CCGCACA-GGGATGGAGTCACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATAA 23817 Query 129960 TGGCGTGAATGGTCTCCGT-GCCAGGTCTATTGCGCAA---AGTCTTG----AAGAGTTC 130011 | || |||| |||||| | || | | || | ||| ||| || || || Sbjct 23818 TCTCGCGAATACGCTCCGTTGGTAGCT-TGTT-CACAATGTAGTTTTCGTACAACAGG-- 23873 Query 130012 CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 130071 |||| |||| ||| ||| | || || ||||| |||||||||||||| ||| ||| Sbjct 23874 CACG-CAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAG 23932 Query 130072 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 130131 || ||||| ||||| |||||||| | |||||| | |||||| || ||||| || ||||| Sbjct 23933 CCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAA 23992 Query 130132 GATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GGGACTTTGTAT 130190 || || ||||| ||| || |||| || || || ||||| || | | || | || Sbjct 23993 AATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTGCGGAT 24052 Query 130191 CAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-T 130249 |||| |||||||| | |||||||||| ||| ||||| | ||| || || | Sbjct 24053 ----CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGT 24108 Query 130250 TCA--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAAT 130307 || | | | ||||||| || | |||| |||||||| |||| | || || | Sbjct 24109 GCAACATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGAGT 24165 Query 130308 ATGTTTCGCCATGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTC 130365 ||||||| ||| || | ||| |||||| ||| || ||||||| ||||| | || Sbjct 24166 ATGTTTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTC 24223 Query 130366 GCTTATCTGTACCTC 130380 || |||||| || Sbjct 24224 CGGTACCTGTACTTC 24238 >seq516 Length=139422 Score = 134 bits (148), Expect = 2e-26 Identities = 444/675 (66%), Gaps = 44/675 (7%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| |||||| |||||||||||||| || | || ||| | |||||| Sbjct 83993 TACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCATA 84052 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGCTGGCAC-TCCAATCTGTTTGAGG 129841 || || ||||||||||||||||| | | | || || | | | | || Sbjct 84053 AAGTCGAATGGGTTCTTTGAGTTGTAGTGACGTTCGTTGCCAAGTGCCACC------AGC 84106 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 || ||||||| || |||| |||||| |||||| || | |||||| || | || Sbjct 84107 AGCCGATCCGCCACAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGC 84166 Query 129902 TT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT 129960 ||| |||| ||||| |||| ||| | |||||| ||||| || | | || Sbjct 84167 CGCACA-GGGATGGCGTCACAGATAAACTCACGCTCAATATCCACCGCACTGCAAATAAT 84225 Query 129961 GGCGTGAATGGTCTCCGTGCCAGGTCTATTG--CGCAA---AGTCTTG----AAGAGTTC 130011 || |||| |||| | ||| ||| | ||| ||| || || || Sbjct 84226 CTCGCGAATACGCTCCTTT---GGTAACTTGTTCACAATGTAGTTTTCGTACAACAGG-- 84280 Query 130012 CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 130071 |||| |||| ||| ||| | || || ||||| |||||||||||||| ||| ||| Sbjct 84281 CACG-CAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAG 84339 Query 130072 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 130131 || ||||| ||||| |||||||| | |||||| | |||||| || ||||| || ||||| Sbjct 84340 CCCGGGCATCAGACCACGCTTCTTTAGCCAGAAGAGCGCACAGAAGGAGCCGGAAAAGAA 84399 Query 130132 GATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GGGACTTTGTAT 130190 || || ||||| ||| || |||| || || || ||||| || | | || | || Sbjct 84400 AATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGCTGCTGCGGAT 84459 Query 130191 CAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-T 130249 |||| |||||||| | |||||||||| ||| ||||| | ||| || || | Sbjct 84460 ----CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGT 84515 Query 130250 TCA--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAAT 130307 || | | | ||||||| || | |||| |||||||| |||| | | || | Sbjct 84516 GCAACATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAACACCGAGT 84572 Query 130308 ATGTTTCGCCATGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTC 130365 ||||||| ||| || | ||| |||||| ||| || ||||||| ||||| | || Sbjct 84573 ATGTTTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTC 84630 Query 130366 GCTTATCTGTACCTC 130380 || |||||| || Sbjct 84631 CGGTACCTGTACTTC 84645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618207190672200