Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq594 131 2e-25 >seq594 Length=267672 Score = 131 bits (144), Expect = 2e-25 Identities = 655/1025 (64%), Gaps = 35/1025 (3%) Strand=Plus/Minus Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||||||||| ||||| ||||||| || ||||| |||||| | || || ||||| Sbjct 92760 CATGCTTTACAAGGACGCATGTAACCGTAAATCAAATCAGAAGAATGTTGGAGTCATCAA 92701 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 | | || || || || ||||| || | || | |||| | |||||| || ||||| Sbjct 92700 GTGCTCGAACCTTTGCACAGAGATTATAGAGTATACATCAAGGGATGAGGTCGCGGTGTG 92641 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GAT 105109 ||||| || || || || || || | ||||||| |||| || || |||| || Sbjct 92640 CAACCTTGCCTCCATTGCACTTCCACGCTTTGTGGATAAGGAGAGAA-GA-ATTTACGAC 92583 Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169 | | || | || || ||||||| |||||| ||||| || || |||| || ||| Sbjct 92582 CACCAGCGGCTGTATGAGGTCACGAAAATTGTCACAAAAAATCTTAATCGAGTGATCGAT 92523 Query 105170 AGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 | || ||| || || ||| | || || | | | | | ||||| ||| Sbjct 92522 CGTAACCATTATCCTGTACCCGAGTCGCGCCG--AAGCAACGAGCTCA-ATCGTCCCATT 92466 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTT-TGTCGCCACGCATTTGATTC 105285 || | || || || || | |||||| || || || || || || |||| | Sbjct 92465 GGAATTGGCGTGCAAGGAATGGCGGATACTTTTATCCTGATGCGGCTAC-CATTCACATG 92407 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 | | || |||| | | |||| || ||||| || || || ||| ||| | || Sbjct 92406 CCAGGAGGCGAGGACTTTGAATGAAGATATTTTTGAAACGATTTACTACGGTGCTGTGGA 92347 Query 105346 GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405 |||||| || | || || || || || || |||| |||| || ||| || Sbjct 92346 GGCGAGCGTGGAACTCGCGGAAGTGGAGGGGCCCTATGCGCGGTTTGCAGGCAGTCCCGC 92287 Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAGCTTCA-CTACG 105461 || ||||| ||| || |||||| ||||||| | || ||| ||| | || | Sbjct 92286 GTCGCAAGGCCAGCTACAGTTTGATCTGTGGGA-GCAGAAACCGCGAAGTGGCCGCTGGG 92228 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||||| || | ||| | || || | | | | || | || || | || ||| Sbjct 92227 ATTGGGATGCATTGAAGAAGCGTATGATGAAAAGTGGCATGCGGAATTCGTTACTGTTGG 92168 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAACCC 105580 |||||||||| || || ||||| | || || |||||| || ||||| |||||||| || Sbjct 92167 CTCCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTTTGAGCCA 92109 Query 105581 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAG 105640 | || | || ||||| || | || || || |||||| | || |||||| Sbjct 92108 TTTACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTTAACAAG 92049 Query 105641 CATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TC 105697 | || ||| || |||| || ||||| ||| | | || ||| ||| || Sbjct 92048 TACCTTGTGATGGATCTCATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAATCAGATC 91989 Query 105698 ATGG--TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755 || | | || ||| || | ||||||||| || ||||||||||| | ||| Sbjct 91988 ATTGCCTACAA-----TGGCTCGGTGCAAAATATTAGGGGCATTCCAAATGACCTCAAGG 91934 Query 105756 AGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATC 105815 || |||| || || ||||| || | ||||||| |||| || ||||| | || | Sbjct 91933 AGCTGTATCGTGTTGTGTGGGAGATTCGGCAGAAGGATCTCATCGAGATGGCTGTGGACC 91874 Query 105816 GTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGT 105875 |||| |||||||| || |||||||| ||||||| || |||||| |||||| | Sbjct 91873 GTGGCAAGTTCATTGACCAGAGTCAAAGCTTGAATCTATTTTTGGAAAATCCAAC---TT 91817 Query 105876 CCA---AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGT 105932 ||| |||| | || |||||| | | ||| | || || || ||||| |||| Sbjct 91816 CCAGCCAGCTGACATCCATGCACTTTTTTGCCTGGGAACGTGGCCTAAAGACGGGCATGT 91757 Query 105933 ATTAC 105937 ||||| Sbjct 91756 ATTAC 91752 Score = 98.7 bits (108), Expect = 1e-15 Identities = 285/433 (66%), Gaps = 18/433 (4%) Strand=Plus/Minus Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAA 105577 ||||||||||||| || || ||||| | || || |||||| || ||||| |||||||| Sbjct 88144 TGGCTCCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTTTGAG 88086 Query 105578 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 || | || | || ||||| || | || || || |||||| | || ||| Sbjct 88085 CCATTTACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTTAAC 88026 Query 105638 AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC-- 105695 ||| | || ||| || |||| || ||||| ||| | | || ||| ||| Sbjct 88025 AAGTACCTTGTGATGGATCTCATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAATCAG 87966 Query 105696 -TCATGG--TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTA 105752 |||| | | || ||| || | ||||| ||| || ||||||||||| | | Sbjct 87965 ATCATTGCCTACAA-----TGGCTCGGTGCAAAACATTAGGGGCATTCCAAATGACCTCA 87911 Query 105753 AGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAG 105812 || || |||| || || ||||| || | ||||||| |||| || ||||| | | Sbjct 87910 AGGAGCTGTATCGTGTTGTGTGGGAGATTCGGCAGAAGGATCTCATCGAGATGGCTGTGG 87851 Query 105813 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGA 105872 | ||||| |||||||| || |||||||| ||||||| || |||||| |||||| Sbjct 87850 ACCGTGGCAAGTTCATTGACCAGAGTCAAAGCTTGAATCTATTTTTGGAAAATCCAAC-- 87793 Query 105873 TGTCCA---AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGA 105929 |||| | || | || |||||| | | ||| | || || || ||||| | Sbjct 87792 -TTCCAGCCAACTGACATCCATGCACTTTTTTGCCTGGGAACGTGGCCTAAAGACGGGTA 87734 Query 105930 TGTATTACCTCCG 105942 |||||||||| || Sbjct 87733 TGTATTACCTACG 87721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583045759033800