Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq29444 111 5e-19 seq516 111 5e-19 seq19126 107 6e-18 seq9147 98.7 3e-15 seq220 98.7 3e-15 seq594 91.5 4e-13 >seq29444 Length=14792 Score = 111 bits (122), Expect = 5e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 1680 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGCGTGCGGCCGTCC 1739 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| || || ||||| || || ||||| ||||| || ||| Sbjct 1740 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCC 1799 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| || || || | || || Sbjct 1800 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACCTCGAGCGCAATCGT 1858 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || |||||||||||||| Sbjct 1859 CTTGCCCGTCAGTGTCTTCACAAAAATCTGCAT 1891 Score = 107 bits (118), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 540 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGCGTGCGGCCGTCC 599 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| ||||| || ||| Sbjct 600 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCC 659 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| || || || | || || Sbjct 660 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACCTCGAGCGCAATCGT 718 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 719 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 751 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || || || || || || || || || | | || || || || Sbjct 996 AGCACAAGGTGCAGCGTGGATTCCTTCTGGATGTTGTAGTCTGCAAGCGTGCGGCCGTCC 1055 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| ||||| || ||| Sbjct 1056 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCC 1115 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| || || || | || || Sbjct 1116 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACCTCGAGCGCAATCGT 1174 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 1175 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 1207 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 2346 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGCGTGCGGCCGTCC 2405 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 2406 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCC 2465 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| || || || | || || Sbjct 2466 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACCTCGAGCGCAATCGT 2524 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 2525 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 2557 >seq516 Length=139422 Score = 111 bits (122), Expect = 5e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 137613 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGCGTGCGGCCGTCC 137672 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 137673 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCC 137732 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| || ||||| | || || Sbjct 137733 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACCTCAAGCGCAATCGT 137791 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || ||||| |||||||| Sbjct 137792 CTTGCCCGTCAGTGTCTTCACAAAGATCTGCAT 137824 Score = 107 bits (118), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 138963 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGCGTGCGGCCGTCC 139022 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| ||||| || ||| Sbjct 139023 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCC 139082 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| || || || | || || Sbjct 139083 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACCTCGAGCGCAATCGT 139141 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 139142 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 139174 >seq19126 Length=1000 Score = 107 bits (118), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 758 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGCGTGCGGCCGTCC 699 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| ||||| || ||| Sbjct 698 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCC 639 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| || || || | || || Sbjct 638 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACCTCGAGCGCAATCGT 580 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 579 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 547 Score = 107 bits (118), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 986 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGCGTGCGGCCGTCC 927 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| ||||| || ||| Sbjct 926 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCC 867 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| || || || | || || Sbjct 866 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACCTCGAGCGCAATCGT 808 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 807 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 775 >seq9147 Length=854 Score = 98.7 bits (108), Expect = 3e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 364 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 305 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 304 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 245 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| || || || | | || Sbjct 244 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACCTCGAGCGCGATCGT 186 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 185 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 153 >seq220 Length=24417 Score = 98.7 bits (108), Expect = 3e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 22973 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 22914 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 22913 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 22854 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| || || || | | || Sbjct 22853 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACCTCGAGCGCGATCGT 22795 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 22794 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 22762 >seq594 Length=267672 Score = 91.5 bits (100), Expect = 4e-13 Identities = 186/274 (68%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 206448 CTGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCATTAGA 206507 ||| || | ||| || || || ||||| | || | |||||| || | || || || || Sbjct 93108 CTGATCTACATAGCGCGCCGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGA 93167 Query 206508 AGTTCCATTTGTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTAATCC 206567 |||||||| || ||| | || || | | | ||||| || | || | || Sbjct 93168 CTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAGCGGATATTGTGCACGTGGACGCC 93227 Query 206568 AATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTCCATC 206627 ||| || || || |||| ||| || |||| || ||||||| |||||| || || Sbjct 93228 AATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCATAAATCCCCTC 93287 Query 206628 AACACTATCACTTTC-CATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCGTTC 206686 || ||| || || | ||| |||| | |||||||||||| | ||| || ||||||| Sbjct 93288 AATACTGTC-CTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGCGTTC 93346 Query 206687 CAGCATTAAATAAAGTAGGAGTAGCATGTGTAAA 206720 | ||||| ||||| || || || |||||||| || Sbjct 93347 CGGCATTGAATAATGTCGGTGTGGCATGTGTGAA 93380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514681778259485