Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq638 158 1e-33 seq479 158 1e-33 seq516 113 5e-20 seq505 100 3e-16 seq342 100 3e-16 seq12641 98.7 1e-15 seq278 98.7 1e-15 >seq638 Length=990720 Score = 158 bits (174), Expect = 1e-33 Identities = 245/350 (70%), Gaps = 9/350 (3%) Strand=Plus/Minus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| | | ||||||| ||| ||||| | | ||| | || || || || | | Sbjct 792996 AACTCCCTCACGCTGTGCTGCTCGCCCGTCGCCAGCACCCAGTCGTCAGGCTTCTCCGCC 792937 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||| | || |||||||||| |||||||||||||| ||| |||| Sbjct 792936 TGCAGCATGAGCCACATGCCGTGCACGTAGTCCTTCGCGTGCCCCCAGTCACGCAGGGCA 792877 Query 124614 TCCAGGTTTCCGAG------CTCGATTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCC 124667 | || ||| || || ||| | || || ||||| | | | |||| | | Sbjct 792876 TTCACGTTGCCAAGAAGCAGCTCCTTCTGCAGACCCTTCTTGATGCGCACCGCAGCCCGC 792817 Query 124668 AGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGA 124727 | | | |||| |||||||||| | |||||||| |||||||||||||||||| Sbjct 792816 ACTATCTTCTT---CGTCACAAACGTCGCGCCGCGTCGTGGCGACTCGTGGTTGAACAGA 792760 Query 124728 ATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCA 124787 ||||| | ||||||||||| ||||||||||| |||||||| || |||||| | | Sbjct 792759 ATGCCGTTGCACGCAAACATACCGTACGACTCACGGTAGTTCACTGTGATCCAAAAGGCG 792700 Query 124788 AAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 | ||||| | ||| | || ||||| || |||| ||| || || || || Sbjct 792699 TACAGCTTCGCCACCGCGTACGGGCTGCGCGGGTGGAAGGGCGTCTTCTC 792650 >seq479 Length=119321 Score = 158 bits (174), Expect = 1e-33 Identities = 245/350 (70%), Gaps = 9/350 (3%) Strand=Plus/Plus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| | | ||||||| ||| ||||| | | ||| | || || || || | | Sbjct 791 AACTCCCTCACGCTGTGCTGCTCGCCCGTCGCCAGCACCCAGTCGTCAGGCTTCTCCGCC 850 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||| | || |||||||||| |||||||||||||| ||| |||| Sbjct 851 TGCAGCATGAGCCACATGCCGTGCACGTAGTCCTTCGCGTGCCCCCAGTCACGCAGGGCA 910 Query 124614 TCCAGGTTTCCGAG------CTCGATTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCC 124667 | || ||| || || ||| | || || ||||| | | | |||| | | Sbjct 911 TTCACGTTGCCAAGAAGCAGCTCCTTCTGCAGACCCTTCTTGATGCGCACCGCAGCCCGC 970 Query 124668 AGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGA 124727 | | | |||| |||||||||| | |||||||| |||||||||||||||||| Sbjct 971 ACTATCTTCTT---CGTCACAAACGTCGCGCCGCGTCGTGGCGACTCGTGGTTGAACAGA 1027 Query 124728 ATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCA 124787 ||||| | ||||||||||| ||||||||||| |||||||| || |||||| | | Sbjct 1028 ATGCCGTTGCACGCAAACATACCGTACGACTCACGGTAGTTCACTGTGATCCAAAAGGCG 1087 Query 124788 AAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 | ||||| | ||| | || ||||| || |||| ||| || || || || Sbjct 1088 TACAGCTTCGCCACCGCGTACGGGCTGCGCGGGTGGAAGGGCGTCTTCTC 1137 >seq516 Length=139422 Score = 113 bits (124), Expect = 5e-20 Identities = 529/823 (64%), Gaps = 39/823 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||||||| ||| ||||| ||||| ||||| || | || ||||| | ||||| Sbjct 83993 TACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCATA 84052 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGG--- 74579 ||||||| |||||||||| ||| | | | | |||| |||||| || Sbjct 84053 AAGTCGAATGGGTTCTTTGAGTTGTAGTGACGTTCGTTGCCAA---GTGCCACCAGCAGC 84109 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 |||||||||||||| | |||||| || ||| | || | ||| || | || | Sbjct 84110 CGATCCGCCACAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGCC-G 84168 Query 74640 CAC-GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATC 74696 ||| || | || || ||||||||||| ||| | || | | || || | | ||| Sbjct 84169 CACAGGGATGGCGTCACAGATAAACTCACGCTCAATATCC--ACCGCACTGCAAATAATC 84226 Query 74697 TTGTGAATGT----CTTTGGAAGGGCACTT-TTCCCTCAG--GTGAGAGTAAAGC-GTCA 74748 | | |||| |||||| | |||| ||| | | || ||| | | | || Sbjct 84227 TCGCGAATACGCTCCTTTGGTA----ACTTGTTCACAATGTAGTTTTCGTACAACAGGCA 84282 Query 74749 CGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808 || |||| ||| ||| |||||||||| | || | |||||| |||| || | Sbjct 84283 CG-CAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCC 84341 Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868 | ||||| || ||||||||||| | ||| |||| ||||||||||| || ||||| | Sbjct 84342 CGGGCATCAGACCACGCTTCTTTAGCCAGAAGAGCGCACAGAAGGAGCCGGAAAAGAAAA 84401 Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC-----GGTGCATCGGAAGT 74923 | ||||| || ||||||||| |||||||||| || ||| | ||| |||| | Sbjct 84402 TACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGCTGCTGCGGA--T 84459 Query 74924 CATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCG--ATCGCT 74981 | || | || ||||| | || ||| | || ||| ||| | | ||| || || Sbjct 84460 CCACCGAATC---GCCCAGTTGGCCTTT-TTCTGGATGCACGGA-ATTGTCGAAATGGCG 84514 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 || || | || ||||||| || | ||| ||| | | | || | || | ||||| Sbjct 84515 TGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAACACCGAGTAT 84574 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 || |||||||||| ||| || |||| || ||||||| | ||| |||| | Sbjct 84575 GTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGT 84634 Query 75102 ATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 | |||||| ||| | || | | | ||||||| || || || || ||| Sbjct 84635 ACCTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTGCG 84694 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || || || ||||| || ||||||||| ||| | || | | || ||||| Sbjct 84695 GCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTCTCCCAG 84754 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGA 75264 ||| || ||| | ||| || || ||||| |||||||||| Sbjct 84755 TCCGCCAAGTCACTGCTCAAGTCGATTTCCTCCACCGTCCAGA 84797 >seq505 Length=133481 Score = 100 bits (110), Expect = 3e-16 Identities = 215/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 117983 GGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCC 118042 ||||| || ||| |||||||| | | ||| || ||||| ||||| || || ||||| Sbjct 107787 GGCCAATAGTGGTGAATCATGTTGATGATGAGGCCTTTGATGTGGGAGCCATCATGATCC 107728 Query 118043 GCATCGGTCATGATCATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGTTATAAACCTTA 118102 ||| | ||||||||||||| | ||||| || || | || | | | || | | Sbjct 107727 TGATCTGACATGATCATCAGGTGTCCGTAACGCAACCGTTCCACGCCGCTGTACTTTTGA 107668 Query 118103 CCATGTTGGAGCCCGAGGATCTTTTTAA--GGTTGGAAAATTCCTCATTTTCCGTCACCT 118160 | | | || || | |||||| | | | ||| ||| || || || | || | Sbjct 107667 CGAATGTCAAGGCCCATGATCTTACTGACAGCTTG--AAACTCTGCACACGCCATTACTT 107610 Query 118161 GTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACT 118220 ||| | || ||||| || |||||| | || || || |||| ||||||||||||||| | Sbjct 107609 TTTTCAGTGTTGCGTCACGCACGTTGAGGGGTTTCCCACGCAATGGAAACACGCCAAAGT 107550 Query 118221 TGTCACGGCCCACAACGCTCAAG-CCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCG 118279 ||||||| || ||| |||| ||||| || ||| ||||| || ||||| ||||| Sbjct 107549 AGTCACGGTCCTTCACG-GCAAGTCCGGCCGTACAAAGCGCCTTTGCTGAGTCCCCCTCC 107491 Query 118280 GTAATAATAAGAGTGCA 118296 || | ||||| || || Sbjct 107490 GTGAGGATAAGGGTACA 107474 >seq342 Length=56107 Score = 100 bits (110), Expect = 3e-16 Identities = 215/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 117983 GGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCC 118042 ||||| || ||| |||||||| | | ||| || ||||| ||||| || || ||||| Sbjct 24099 GGCCAATAGTGGTGAATCATGTTGATGATGAGGCCTTTGATGTGGGAGCCATCATGATCC 24040 Query 118043 GCATCGGTCATGATCATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGTTATAAACCTTA 118102 ||| | ||||||||||||| | ||||| || || | || | | | || | | Sbjct 24039 TGATCTGACATGATCATCAGGTGTCCGTAACGCAACCGTTCCACGCCGCTGTACTTTTGA 23980 Query 118103 CCATGTTGGAGCCCGAGGATCTTTTTAA--GGTTGGAAAATTCCTCATTTTCCGTCACCT 118160 | | | || || | |||||| | | | ||| ||| || || || | || | Sbjct 23979 CGAATGTCAAGGCCCATGATCTTACTGACAGCTTG--AAACTCTGCACACGCCATTACTT 23922 Query 118161 GTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACT 118220 ||| | || ||||| || |||||| | || || || |||| ||||||||||||||| | Sbjct 23921 TTTTCAGTGTTGCGTCACGCACGTTGAGGGGTTTCCCACGCAATGGAAACACGCCAAAGT 23862 Query 118221 TGTCACGGCCCACAACGCTCAAG-CCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCG 118279 ||||||| || ||| |||| ||||| || ||| ||||| || ||||| ||||| Sbjct 23861 AGTCACGGTCCTTCACG-GCAAGTCCGGCCGTACAAAGCGCCTTTGCTGAGTCCCCCTCC 23803 Query 118280 GTAATAATAAGAGTGCA 118296 || | ||||| || || Sbjct 23802 GTGAGGATAAGGGTACA 23786 >seq12641 Length=906 Score = 98.7 bits (108), Expect = 1e-15 Identities = 340/523 (65%), Gaps = 18/523 (3%) Strand=Plus/Minus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| ||| ||| |||||||||| | || | |||||| |||| || || Sbjct 539 GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCCG 480 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || ||||||||||| | ||| || | ||||||||||| || ||||| || Sbjct 479 GGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAATA 420 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC-----GGTGCATCGGAAGTCA 74925 ||||| || ||||||||| |||||||||| || ||| | ||| |||| || Sbjct 419 CCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTGCGGA--TCC 362 Query 74926 TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCG--ATCGCTTG 74983 || | || ||||| | || ||| | || ||| ||| | | ||| || || || Sbjct 361 ACCGAATC---GCCCAGTTGGCCTTT-TTCTGGATGCACGGA-ATTGTCGAAATGGCGTG 307 Query 74984 GAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 || | || ||||||| || | ||| ||| | | | || | || | ||||| || Sbjct 306 CAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGT 247 Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 |||||||||| ||| || |||| || ||||||| | ||| |||| | | Sbjct 246 TTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTAC 187 Query 75104 CTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 |||||| ||| | |||| | | | | ||||||| || || || || ||| Sbjct 186 CTGTACTTCCGTCATGAACCGCTGA--GCCAGGTTCTCCAGCACAATTCCATCACTTGCG 129 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || || || || || || ||||||||| ||| | || | | || ||||| Sbjct 128 GCAAAGAACGCTAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTCTCCCAG 69 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGA 75264 ||| || ||| | |||||| || ||||| |||||||||| Sbjct 68 TCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCCAGA 26 >seq278 Length=37984 Score = 98.7 bits (108), Expect = 1e-15 Identities = 340/523 (65%), Gaps = 18/523 (3%) Strand=Plus/Plus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| ||| ||| |||||||||| | || | |||||| |||| || || Sbjct 23877 GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCCG 23936 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || ||||||||||| | ||| || | ||||||||||| || ||||| || Sbjct 23937 GGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAATA 23996 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC-----GGTGCATCGGAAGTCA 74925 ||||| || ||||||||| |||||||||| || ||| | ||| |||| || Sbjct 23997 CCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTGCGGA--TCC 24054 Query 74926 TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCG--ATCGCTTG 74983 || | || ||||| | || ||| | || ||| ||| | | ||| || || || Sbjct 24055 ACCGAATC---GCCCAGTTGGCCTTT-TTCTGGATGCACGGA-ATTGTCGAAATGGCGTG 24109 Query 74984 GAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 || | || ||||||| || | ||| ||| | | | || | || | ||||| || Sbjct 24110 CAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGT 24169 Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 |||||||||| ||| || |||| || ||||||| | ||| |||| | | Sbjct 24170 TTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTAC 24229 Query 75104 CTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 |||||| ||| | |||| | | | | ||||||| || || || || ||| Sbjct 24230 CTGTACTTCCGTCATGAACCGCTGA--GCCAGGTTCTCCAGCACAATTCCATCACTTGCG 24287 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || || || || || || ||||||||| ||| | || | | || ||||| Sbjct 24288 GCAAAGAACGCTAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTCTCCCAG 24347 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGA 75264 ||| || ||| | |||||| || ||||| |||||||||| Sbjct 24348 TCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCCAGA 24390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547014248301000