Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq13611 365 2e-96 seq5240 150 7e-32 >seq13611 Length=919 Score = 365 bits (404), Expect = 2e-96 Identities = 302/365 (83%), Gaps = 5/365 (1%) Strand=Plus/Plus Query 33617 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 33674 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 558 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 617 Query 33675 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 33734 ||| || ||| ||||||| || || | |||||||| |||||| ||| |||||||||| Sbjct 618 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATG 677 Query 33735 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 33794 ||||||| || ||||| | |||| ||| ||| ||||| ||||| | |||||||||||| Sbjct 678 TTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATG 737 Query 33795 CTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAG 33854 |||| || | ||| |||||||||||| || | ||| ||||| || |||| ||| Sbjct 738 CTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGT-CAG 796 Query 33855 GTCCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGG 33914 | ||||||||||||||| | || || |||||||||||||| || ||||||||||| Sbjct 797 --TCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGG 854 Query 33915 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 33974 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 855 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 914 Query 33975 AACTG 33979 ||||| Sbjct 915 AACTG 919 >seq5240 Length=752 Score = 150 bits (166), Expect = 7e-32 Identities = 88/91 (97%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 9934 CCTACCGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 9993 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 9994 CTTTCCCGTTCATCCAGCAGTGCCAGCGCAA 10024 ||||||||||||||||||||| ||||| ||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCACAA 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203222921123350