Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq590 113 4e-20 seq614 100 2e-16 >seq590 Length=263001 Score = 113 bits (124), Expect = 4e-20 Identities = 377/576 (65%), Gaps = 12/576 (2%) Strand=Plus/Minus Query 29878 CGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGG 29937 ||| || |||| || ||| ||||||||||| || ||| |||| || ||||||||||| Sbjct 236156 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 236097 Query 29938 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29997 ||||| || | | || || | | || | ||| | |||| ||| ||||| || Sbjct 236096 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 236037 Query 29998 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC 30057 || || || || |||||||| | || | |||||||||| || || || || || | Sbjct 236036 CGGGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATT 235977 Query 30058 GCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 ||||||||||||||| | ||||||||| || || ||||| | ||| | | Sbjct 235976 GCTCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCT 235917 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177 || ||||| || | | || || | || || || || || | | || || Sbjct 235916 CGGATTCCATGCCGTGAATAGCATCCGGCGATCGTCAGGATTTGTCTTTAGCGTTTCAAC 235857 Query 30178 G-GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTAC 30235 | | ||| | |||||||| ||| || |||| || | |||| || ||||| Sbjct 235856 GATTGCCTTG-ATTTGATCCACACCCTGTCCGTCATAGT-TGGCATCATGGTGTGTGTAG 235799 Query 30236 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30295 | || || || || | |||||| || ||||| || || || ||| ||| || ||| | Sbjct 235798 GCGGCACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGG--TCCATC-TCCTCG 235742 Query 30296 TGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 | ||| || ||| | |||| | ||| | | || |||||| ||||||| || | Sbjct 235741 TACTCTGTGAGGCCACGACTGTCAAGAAACGCGCGCGAGCCGTTGTCGTCCCATATGTGG 235682 Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30412 || ||||| ||| | || ||||| | ||| || | | ||||||||||| ||| Sbjct 235681 ACTCCCTTGTCACTTAACTTTTTGGCATATGTTTCGCCCCGTAGAAACCACAGCAGTTCC 235622 Query 30413 TC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30447 || ||| || | |||||| |||| ||| || || Sbjct 235621 TCGCAC-ACACCGCGCCAAAAAACCCGCTTCGTTGT 235587 >seq614 Length=348591 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 29878 CGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGG 29937 ||| || |||| || ||| ||||||||||| || ||| |||| || ||||||||||| Sbjct 130232 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 130291 Query 29938 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29997 ||||| || | | || || | | || | ||| | |||| ||| ||||| || Sbjct 130292 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 130351 Query 29998 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC 30057 || || || || |||||||| | || | |||||||||| || || || || || | Sbjct 130352 TGGGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGAAAGTTCCCCATT 130411 Query 30058 GCTCACGTAAAACTG 30072 ||||||||||||||| Sbjct 130412 GCTCACGTAAAACTG 130426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406164343473540