Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq13611 250 1e-61 seq5240 140 1e-28 >seq13611 Length=919 Score = 250 bits (276), Expect = 1e-61 Identities = 221/274 (81%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 31696 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGAGATAAAAAAGTCAGAGAG 31755 || ||||||||||| ||||| | ||||||||||| ||||| || ||||| | |||||| Sbjct 566 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 625 Query 31756 CTGGAGCTGGCAAACGCAACCATTACTGATATGCAGGTGCGCCAGCGTGATGTTGCTGCG 31815 ||| ||||||| ||||| | |||||||| |||||| |||| |||||||||||||||||| Sbjct 626 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCG 685 Query 31816 CTTGATGCTAAATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 31875 || ||||| |||||| ||| ||| ||||| ||||| | |||||||||||| |||||||| Sbjct 686 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGT 745 Query 31876 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGCTCAACGCCACCTGCCCCGGTACCGTG 31935 | ||||||||||||||||||| || ||| |||| || ||| | || | ||| Sbjct 746 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG--TCAGT-CAGTG 802 Query 31936 CGTGAAGCCACCGGCACCTCCGGCGTGGGCAATG 31969 |||||||||||| | |||||||||||| |||| Sbjct 803 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATG 836 >seq5240 Length=752 Score = 140 bits (154), Expect = 1e-28 Identities = 157/205 (77%), Gaps = 14/205 (7%) Strand=Plus/Minus Query 7581 CCTACCGTTAGCGCAATCTCCTCGTTCTCCTGGTCGCGCTGTTTAATGTATTGCTGGTTT 7640 ||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 7641 CTTTCCTGTTCATCCAGCAGTGCCAGCACAACCTGAGGTGTGGC--TTTCATACGAAATG 7698 |||||| |||||||||||||| ||||||||| | ||||| | ||||| ||| | Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGTGTTACCAATTCATGGAAAAGG 633 Query 7699 CCAG---CAATTTTTGAGGCGT--TGCTACTGTTTCAATTGCTACTGCCGCCTCACGCAG 7753 | | ||| | || ||| ||| | || |||| ||||||| |||||||| Sbjct 632 TCTGCGTCAAATCCCCAGTCGTCATGC-ATTG-----CCTGCT-CTGCCGCTTCACGCAG 580 Query 7754 TGCCTGGTAATTAATTTTGCTCACT 7778 |||||| | ||||||| ||||||| Sbjct 579 TGCCTGAGAGTTAATTTCGCTCACT 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200926147042340