Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq13611 365 2e-96 seq5240 149 2e-31 >seq13611 Length=919 Score = 365 bits (404), Expect = 2e-96 Identities = 302/365 (83%), Gaps = 5/365 (1%) Strand=Plus/Plus Query 27076 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 27133 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 558 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 617 Query 27134 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 27193 ||| || ||| ||||||| || || | |||||||| |||||| ||| |||||||||| Sbjct 618 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATG 677 Query 27194 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 27253 ||||||| || ||||| | |||| ||| ||| ||||| ||||| | |||||||||||| Sbjct 678 TTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATG 737 Query 27254 CTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAG 27313 |||| || | ||| |||||||||||| || | ||| ||||| || |||| ||| Sbjct 738 CTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGT-CAG 796 Query 27314 GTCCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGG 27373 | ||||||||||||||| | || || |||||||||||||| || ||||||||||| Sbjct 797 --TCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGG 854 Query 27374 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 27433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 855 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 914 Query 27434 AACTG 27438 ||||| Sbjct 915 AACTG 919 >seq5240 Length=752 Score = 149 bits (164), Expect = 2e-31 Identities = 177/237 (75%), Gaps = 11/237 (5%) Strand=Plus/Minus Query 58991 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 59050 ||||||||| |||||||||||| |||||||||| | ||||| ||||||||| || ||| Sbjct 561 GCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAA 502 Query 59051 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 59110 || || || || |||| || |||||| || ||||||||||||||||||||||| ||| Sbjct 501 GTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 442 Query 59111 CAATGAGTAGCAGATGGGGCAT--TACTTTCGGATTTGTATTT---TTGCAGGGAGAGAT 59165 |||||||| |||||| || | | || || | |||| |||| | | | Sbjct 441 CAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTG-----T 387 Query 59166 TGCGCTGCAATTCTTCGATTTCAGCGGCATTGTCGATGATATCTGCCAT-TTTCCTT 59221 ||||||| |||||||| ||||| | || || ||||| |||||||| |||| || Sbjct 386 TGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 330 Score = 147 bits (162), Expect = 9e-31 Identities = 86/89 (97%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 58394 CCTACCGTAAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 58453 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 58454 CTTTCCCGTTCATCCAGCAGTGCCAGCAC 58482 ||||||||||||||||||||| ||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194610213282030