Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq590 87.8 2e-12 >seq590 Length=263001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 445/708 (63%), Gaps = 5/708 (1%) Strand=Plus/Plus Query 34096 GGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGGA 34155 |||| ||||||||| | |||| || ||| | | ||||| | |||| || Sbjct 235448 GGAGGAGCAGTATCTAAGCCTTGTGGATCGCATCATACGCGAGGGGAATGTGAAGCATGA 235507 Query 34156 CCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGG 34215 ||| || ||| ||| || |||||| | || ||| ||||| || | | || || Sbjct 235508 CCGCACTGGGGTGGGCACGCTCTCCATCTTTGGCGCACAGATGCGTTTCTCGCTCCGCAA 235567 Query 34216 CGAAT----TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGC 34271 | ||| | || || |||| ||||| || || | ||| || ||| |||||| | Sbjct 235568 C-AATCGCCTACCACTTTTGACAACGAAGCGGGTTTTTTGGCGCGGTGTGTGCGAGGAAC 235626 Query 34272 TGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGA 34331 |||||||||| | |||| | || | |||| || | | ||| || | | Sbjct 235627 TGCTGTGGTTTCTACGGGGCGAAACATATGCCAAAAAGTTAAGTGACAAGGGAGTCCACA 235686 Query 34332 TCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGG 34391 | ||||||| |||| || || | ||||| |||| || || || || |||| Sbjct 235687 TATGGGACGACAACGGCTCGCGCGCGTTTCTTGACAGTCGTGGCCTCACAGAGTACGAGG 235746 Query 34392 AGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGG 34451 || ||| | || || |||||||| || |||||| | |||||||| || | || Sbjct 235747 AGATGGACCTCGGTCCTGTCTACGGCTTTCAGTGGCGTCACTTTGGTGCCGCCTACACAC 235806 Query 34452 GGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCT 34511 || || ||||| |||||||| | ||| || | || | | || || Sbjct 235807 ACCATGATGCCAACTATGACGGACAGGGTGTGGATCAAATCAAGGCAATCGTTGAAACGC 235866 Query 34512 TGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCC 34571 | ||| || ||||| || | |||| | | || ||||| |||| | | | | Sbjct 235867 TAAAGACAAATCCTGACGATCGCCGGATGCTATTCACGGCATGGAATCCGAGCGCTTTGC 235926 Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 | |||||| || || ||||||||| ||| || || ||||| |||||||| | Sbjct 235927 CCAGGATGGCCCTACCACCGTGCCACCTGCTCGCACAGTTTTACGTGAGCAATGGGGAAC 235986 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| ||| |||||| || || || | |||||||| | || || ||||||||||||| Sbjct 235987 TGTCTTGCATGCTCTACCAGCGCTCATGTGACATGGGCCTTGGCGTCCCGTTCAACATTG 236046 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGC 34751 | ||||| || | || | | ||||| | | |||| || || || ||| Sbjct 236047 CCTCCTACGCCCTCTTGACCATCCTCATCGCAAAGGCGACGGGGCTGCGGCCGGGAGAGT 236106 Query 34752 TGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 ||||||| || | || || || || | ||| || ||| |||||| Sbjct 236107 TGGTGCACACCCTTGGTGACGCTCACGTGTACAGCAATCACGTCGAGC 236154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 445/708 (63%), Gaps = 5/708 (1%) Strand=Plus/Minus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||||| ||| || ||| | || || || || | || ||||||| ||| || || Sbjct 236154 GCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGGCC 236095 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 || |||| | | ||||| | | || | || ||||| ||||||||||||| Sbjct 236094 GCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAACG 236035 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 | || || | |||||||| | || || || |||||| ||| ||||| |||||||| Sbjct 236034 GGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATTGC 235975 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||| || || ||| ||||||||| || || |||||| || | | | ||| Sbjct 235974 TCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCTCG 235915 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 | ||||| || | | |||| | || ||||| || ||| | || || | | Sbjct 235914 GATTCCATGCCGTGAATAGCATCCGGCGATCGTCAGGATTTGTCTTTAGCGTTTCAACGA 235855 Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCG 6905 || | || ||| | |||||||| ||||| || || || | | Sbjct 235854 TTGCCTTGATTTGATCCACACCCTGTCCGTCATAGTTGGCATCATGGTGTGTGTAGGCGG 235795 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 | |||||||| | |||||| || |||||||| || || | ||| |||||| || Sbjct 235794 CACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGGTCCATCTCCTCGTACTCTG 235735 Query 6966 GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCC 7025 || || || |||| ||||| | || || |||| ||||||| || | || ||| Sbjct 235734 TGAGGCCACGACTGTCAAGAAACGCGCGCGAGCCGTTGTCGTCCCATATGTGGACTCCCT 235675 Query 7026 GGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA 7085 | | || |||| | || | |||| | ||||||||||| |||||| || Sbjct 235674 TGTCACTTAACTTTTTGGCATATGTTTCGCCCCGTAGAAACCACAGCAGTTCCTCGCACA 235615 Query 7086 CGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA----ATTCGCCCCGAAGGTTG 7141 | || ||| | || || ||||| |||| || || | ||| | || || | Sbjct 235614 CACCGCGCCAAAAAACCCGCTTCGTTGTCAAAAGTGGTAGGCGATT-GTTGCGGAGCGAG 235556 Query 7142 TATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGG 7201 | || ||||| ||| || | |||||| || ||| ||| || ||||| |||| Sbjct 235555 AAACGCATCTGTGCGCCAAAGATGGAGAGCGTGCCCACCCCAGTGCGGTCATGCTTCACA 235496 Query 7202 TAGCCCTCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCC 7249 | ||||| | | ||| || |||| | ||||||||| |||| Sbjct 235495 TTCCCCTCGCGTATGATGCGATCCACAAGGCTTAGATACTGCTCCTCC 235448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448097131256400