Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq590 113 3e-20 seq614 109 4e-19 >seq590 Length=263001 Score = 113 bits (124), Expect = 3e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 27144 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG 27203 ||| || ||||||| ||| ||||||||||| || |||||||| || ||||||||||| Sbjct 236156 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 236097 Query 27204 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 27263 ||||| || | | || || | | || | ||| | |||| ||| ||||| || Sbjct 236096 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 236037 Query 27264 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATC 27323 || || || || |||||||| | || | |||||||||| || || || || |||| Sbjct 236036 CGGGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATT 235977 Query 27324 GCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||| ||||||||||| | ||||||||| || || ||||| Sbjct 235976 GCTCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCAT 235932 >seq614 Length=348591 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27144 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG 27203 ||| || ||||||| ||| ||||||||||| || |||||||| || ||||||||||| Sbjct 130232 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 130291 Query 27204 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 27263 ||||| || | | || || | | || | ||| | |||| ||| ||||| || Sbjct 130292 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 130351 Query 27264 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATC 27323 || || || || |||||||| | || | |||||||||| || || || || |||| Sbjct 130352 TGGGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGAAAGTTCCCCATT 130411 Query 27324 GCTTACGTAAAACTG 27338 ||| ||||||||||| Sbjct 130412 GCTCACGTAAAACTG 130426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369374373131345