Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq594 150 2e-31 >seq594 Length=267672 Score = 150 bits (166), Expect = 2e-31 Identities = 296/438 (68%), Gaps = 0/438 (0%) Strand=Plus/Plus Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 78058 ||| || || | ||| || || ||||| ||||| ||||| ||| | |||||| | || Sbjct 92943 CTTCACACGCTCCATGAATAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGCGCCCT 93002 Query 78059 ATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCA 78118 ||| ||||| || || ||||| || || | | ||||| | | |||||| |||||| Sbjct 93003 ATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAGAAAATTAAATATATCACCATGCCA 93062 Query 78119 TGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCT 78178 || |||| || || || | | || || || ||| |||||||||| ||| | Sbjct 93063 AGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGCTTGCCACCCCCCTGATCTACATAGCG 93122 Query 78179 GGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCC 78238 || |||||||| |||| | | ||| || | || ||||| || |||||||| || Sbjct 93123 CGCCGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCC 93182 Query 78239 AGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCAT 78298 || ||| || || || ||| ||||| | | | || || || || || Sbjct 93183 AGCAATGTAGCTCCCGGAACAGCGGATATTGTGCACGTGGACGCCAATGCCACCAGCTGA 93242 Query 78299 CTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCAT 78358 ||| ||| | ||||| | ||||||||||| || || ||||| |||||||| ||| Sbjct 93243 TTTACTTATAACGGCGCATTGCTTCAATGTATCATAAATCCCCTCAATACTGTCCTCCCG 93302 Query 78359 CATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGT 78418 |||| || ||||||||| | ||||||| || | ||||| ||||| |||||||| Sbjct 93303 CATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGCGTTCCGGCATTGAATAATGT 93362 Query 78419 CGGAGATGCATGCGTAAA 78436 ||| | ||||| || || Sbjct 93363 CGGTGTGGCATGTGTGAA 93380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694412684296800