Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq253 123 3e-23 >seq253 Length=51549 Score = 123 bits (136), Expect = 3e-23 Identities = 303/454 (67%), Gaps = 13/454 (3%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || ||||| ||||| || | ||||| || | ||| ||||| || || || Sbjct 29972 AGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTC 30031 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | ||| ||||| || || ||||||| |||||| | |||| || || || |||||| Sbjct 30032 AGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAG 30091 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || ||||| || || | ||||| || | | ||||| || ||| | | || | Sbjct 30092 AAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAA-CTGCTGC--TG 30148 Query 16379 CGAATCCATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 || ||||| | | | |||| | ||| |||| | || || || || ||| Sbjct 30149 CGGATCCA---CCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATG 30205 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | |||| || || |||| |||| | || |||||||| | ||| | | Sbjct 30206 GCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAG 30265 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 || |||| || || | |||||| ||||| ||||| || || |||||||| || ||||| Sbjct 30266 TATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCC 30325 Query 16556 GCTATTTGTACTTCCACGTAA--AATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | || |||||||||| || | || || | |||||||||||| ||| || || |||| Sbjct 30326 GGTACTTGTACTTCC--GTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCAC 30383 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||| ||||| ||||||| | |||||| || || Sbjct 30384 TTGCGGCAAAGAACGCCAGCACGTGCTTGATAAA 30417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511407815539600