Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq253 129 7e-25 seq764 105 8e-18 >seq253 Length=51549 Score = 129 bits (142), Expect = 7e-25 Identities = 356/533 (67%), Gaps = 12/533 (2%) Strand=Plus/Plus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 24244 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 30026 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCG-CACAGAAGGAGCC 30084 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GC 24303 ||||||||||| ||||| || ||||||||||||| ||| | ||| || ||| | || Sbjct 30085 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGC 30143 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || | |||||| ||||| | |||||| || | | || || |||||| | Sbjct 30144 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAA 30203 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAG 24421 | || | || | || || || | ||||| | | || ||||| | || | | Sbjct 30204 TGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCG 30263 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 | ||| |||||||||||| ||| |||||||| || || || |||||||| || | | Sbjct 30264 AGTAT--GTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCAC 30321 Query 24482 CT-CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 || ||||| | |||||||| | || || | || | || || ||| ||||| | Sbjct 30322 CTCCGGTACT-TGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCAT 30380 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 24600 |||| || ||||| ||||||| || || || ||||| | || || || | | | Sbjct 30381 CACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCT 30440 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC-C 24659 | | ||| || | || | | ||| | ||| ||||| |||| | ||| ||| | Sbjct 30441 TCTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTC 30499 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 24712 || || | || ||| | |||||||| ||||| || | || ||||| || || Sbjct 30500 TCGGCTTCCTTGTACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCAC 30552 >seq764 Length=631131 Score = 105 bits (116), Expect = 8e-18 Identities = 294/450 (65%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 ||||| || ||||| || | |||||| |||| ||| || || |||||||||||||| Sbjct 146322 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGTTCCATGAATAGGTCAGGAATCCAAAG 146263 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 146262 AGCGTAAAACAAATCTCGTGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 146203 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 || | |||||| |||||| || || ||||| |||| | | || || || Sbjct 146202 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGCTT 146143 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 || || ||||||| || | ||| |||||||| |||| | | ||| || | || Sbjct 146142 TCCACCCCCTTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 146083 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC---ACTGGCACGAATATTACT 54297 || || || ||||| ||||| | || ||||| || || | || ||||| Sbjct 146082 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAG---CGGATATTGTG 146026 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 | | || || || || || |||| || | |||||| | || || ||||| Sbjct 146025 CACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATC 145966 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 ||| || ||||| ||||| || ||| |||| || |||||||| | |||||| | Sbjct 145965 ATAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGG 145906 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGG 54447 | | ||||| ||||| ||||| || || Sbjct 145905 AAAAGGTGTTCCGGCATTGAATAATGTCGG 145876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593713955834400