Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq774 123 3e-23 >seq774 Length=330331 Score = 123 bits (136), Expect = 3e-23 Identities = 279/413 (68%), Gaps = 16/413 (4%) Strand=Plus/Plus Query 145687 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGC 145746 ||||| ||||| ||| ||| ||||| ||||| || ||| ||| | || || || ||| Sbjct 147362 GGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGGC 147421 Query 145747 TCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAG 145806 || ||||| | |||| | | ||||| |||| |||| ||| |||||||| Sbjct 147422 CGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAAC 147481 Query 145807 GGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCC 145866 || || || || |||||||| | ||||||||||| ||| ||| || || ||||| Sbjct 147482 GGGACACCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATTG 147541 Query 145867 GCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCC 145926 |||||| ||||| || |||||||| || || |||||||| ||||| | | Sbjct 147542 CTCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCTC 147601 Query 145927 GGGTTCCAGGCGGTGAGGACGAGCCTCCTGC--TC-TCGGGGTTCCTCTTGA---TCTCC 145980 || ||||| || || || |||| ||| || || || || ||| |||| | | || Sbjct 147602 GGATTCCATGCCGT---GAAGAGCATCCGGCGATCGTCAGGATTCGTCTTTAGTGTTTCA 147658 Query 145981 CCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTG--TCTTGGAGTCCA 146038 | || || ||| || ||||| ||||| || || | | || ||| || Sbjct 147659 ACGAT---TGCCTTGATTTGATCCACCCCCTGTCCGTCATAGTTGGCATCATGGTGT--G 147713 Query 146039 CGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCC 146091 ||| ||||| || ||||| | |||||| || |||||||| || || |||||| Sbjct 147714 TGTAGGCGGCACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGGTCC 147766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590069202761200