Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq253 131 2e-25 seq764 102 1e-16 >seq253 Length=51549 Score = 131 bits (144), Expect = 2e-25 Identities = 354/532 (67%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| || |||||||| || |||||||| || ||||| || | | | ||| || ||| Sbjct 30026 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCG 30085 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33751 |||||||| || ||||| || || |||||||||| ||| | || || ||| | ||| Sbjct 30086 GAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGCT 30144 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | | |||||| ||||| | |||||| || | | || || || || || Sbjct 30145 GCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAAT 30204 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA--GA 33869 ||| | || | || || || | ||||| | | || ||||| | || | || Sbjct 30205 GGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGA 30264 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||| |||||||||||| ||| |||||||| ||||| || |||||||| || | || Sbjct 30265 GTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 30322 Query 33930 T-CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 | ||||| | || ||||| || || || | || | || || ||| |||||||| Sbjct 30323 TCCGGTACT-TGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATC 30381 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 ||| || ||||| ||||||| || || || ||||| | || || || | | || Sbjct 30382 ACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTT 30441 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC-CT 34107 | ||| || | || | | ||| | ||| ||||| |||| | ||| ||| || Sbjct 30442 CTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTCT 30500 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAAC 34159 | || | || ||| | |||||||| ||||| || | ||| || || || || Sbjct 30501 CGGCTTCCTTGTACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCAC 30552 >seq764 Length=631131 Score = 102 bits (112), Expect = 1e-16 Identities = 293/448 (65%), Gaps = 2/448 (0%) Strand=Plus/Minus Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 ||||| || ||||| || | |||||| |||| ||| || || |||||||||||||| Sbjct 146322 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGTTCCATGAATAGGTCAGGAATCCAAAG 146263 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 ||| ||| | ||||| || ||||| || || || || ||||| || || | | || Sbjct 146262 AGCGTAAAACAAATCTCGTGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 146203 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63418 || | |||||| |||||| || || ||||| ||||| | | || || || Sbjct 146202 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGCTT 146143 Query 63419 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63478 || || ||||||| || | ||| |||||||| |||| | | ||| || | || Sbjct 146142 TCCACCCCCTTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 146083 Query 63479 ACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA-CGAATATTACTAA 63537 |||||||| ||||| || || | || ||| |||| || || ||||| | Sbjct 146082 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAG-CTCCCGGAACAGCGGATATTGTGCA 146024 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63597 | || || || || || |||| || | |||||| | || || || |||| Sbjct 146023 CGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCAT 145964 Query 63598 AGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63657 | || || || || || || || |||| || |||||||| | |||||| || Sbjct 145963 AAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAA 145904 Query 63658 GAGTAGTTCCCGCATTAAATAAGGTAGG 63685 || ||||| ||||| ||||| || || Sbjct 145903 AAGGTGTTCCGGCATTGAATAATGTCGG 145876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809491098400