Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq764 123 2e-23 >seq764 Length=631131 Score = 123 bits (136), Expect = 2e-23 Identities = 333/505 (66%), Gaps = 6/505 (1%) Strand=Plus/Minus Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || |||||||| |||| ||||| | ||| | || ||| |||||| | |||| Sbjct 146294 ACACGTTCCATGAATAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGTGCCCTATGG 146235 Query 38077 TCTTCGTTCCCTACATTCTTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTGCCATGG 38135 ||||| || || ||| |||||| || ||||||| ||||||||| | ||||| || Sbjct 146234 TCTTCCTTACCCGTATT-TTTCTTCAAAAGAAGAAAATTAAATATATCACCATGCCAAGG 146176 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 |||| ||||| | | || ||| | || |||| || |||| | ||| | | | Sbjct 146175 CTCTAAGTAAATGGCAAAGGCGCCTTTACGCTTTCCACCCCCTTGATCTACATAGCGAGC 146116 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255 |||||||| | | | || ||| ||||| | || || || | ||| ||| | || | Sbjct 146115 CGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCCAGC 146056 Query 38256 TATATAAGTACCCTTAGCTCGTATATTACTTA--TCGACAATCCTATTCCACCTGCATGT 38313 || || | || | || ||||| | | ||| || || ||||| || | Sbjct 146055 AATGTAGCTCCCGGAACAGCGGATATTGTGCACGTGGACG--CCAATGCCACCAGCTGAT 145998 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 || ||| | |||||||| || || |||||| | || || || |||||||| ||| Sbjct 145997 TTACTTATAACGGCGCATTGCTTCAATGTATCATAAATCCCCTCAATACTGTCCTCCCGC 145938 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 || | | | ||||||| | ||||||||| || || |||||||| || |||||||| Sbjct 145937 ATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGTGTTCCGGCATTGAATAATGTC 145878 Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCT 38493 || | |||||| |||| | |||| || | |||||| || |||| || Sbjct 145877 GGTGTGGCATGTGTGAAGTACCCAAGAGACATATGGTCATATGTCTCCTTTACGCGCTCC 145818 Query 38494 ATATCACCGCCGTGAATACCTAGAG 38518 ||||| | ||||||||||| |||| Sbjct 145817 ATATCCTCACCGTGAATACCAAGAG 145793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468518767743200