Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq253 111 2e-19 >seq253 Length=51549 Score = 111 bits (122), Expect = 2e-19 Identities = 382/583 (66%), Gaps = 22/583 (4%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| |||| ||| ||||| || ||| | | |||||| | || || | | | ||| Sbjct 30546 TTTCCGATCAAGTACCATGATATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCATCTGG 30487 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 ||||| || || ||||| || || ||| || || ||||||| ||| ||| Sbjct 30486 ACGGTGGAGGAAATCGATTTGAGCAGTGACTTGGCGGACTGGGAGAAGA---TGAACGAA 30430 Query 125118 ACTGAGCGAGAGTT-TATATC--GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 ||| |||| | |||| |||| | |||| |||||||||| |||||||| Sbjct 30429 GGGGAGA---AGTTCTTTATCAAGCACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATT 30373 Query 125175 GTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATT-CCAGAGGTGTCGT 125232 || || || ||| | || ||| | | ||| || | | || |||||| | Sbjct 30372 GTGCTGGAGAACCTGGCGCAGCGGTTCATGACGGAAGT--ACAAGTACCGGAGGTGCGCT 30315 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| || ||||||||||| || ||||||| ||||| ||| Sbjct 30314 GCTTCTACGGGTTCCAGATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGT 30255 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAAT--CGACAC 125350 | || | |||||| ||| || | || || | || |||| || ||||| Sbjct 30254 TGGATACGTACATCACAGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACAA 30195 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | |||| || | |||||||| | |||| ||||||||||||| | || Sbjct 30194 --TTCCGTGCATCCAGAAAAAGGCCAACTGGGCGATTCGGTGGATC---CGCAGCAGCAG 30140 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTA 125469 ||||| ||||| | || || || || || || || || || || ||||||| ||| | Sbjct 30139 TTCGTTTGCCGAACGCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTC 30080 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || || || | || ||||| |||||||| || || |||||||| |||||| ||||| Sbjct 30079 CTTCTG-TGCGCTGTTCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTA 30021 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | || | || || || || || ||| | ||| |||||||| Sbjct 30020 ATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTTTGC 29978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049658862800