Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq234 113 1e-19 seq811 107 4e-18 >seq234 Length=19179 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || ||| Sbjct 4924 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGTGTGCGGCCGTCCTCCAGCTGCTTGCCA 4865 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 4864 GCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 4805 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | ||| ||||| || | || ||||| || || ||||| Sbjct 4804 ACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTC 4745 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 4744 TTCACAAATATCTGCAT 4728 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || ||| Sbjct 6048 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 5989 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 5988 GCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 5929 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | ||| ||||| || | || ||||| || || ||||| Sbjct 5928 ACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTC 5869 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 5868 TTCACAAATATCTGCAT 5852 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || ||| Sbjct 9227 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 9168 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 9167 GCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 9108 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | ||| ||||| || | || ||||| || || ||||| Sbjct 9107 ACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTC 9048 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 9047 TTCACAAATATCTGCAT 9031 >seq811 Length=63688 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || ||| Sbjct 35076 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 35135 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 35136 GCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 35195 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | ||| || || || | || ||||| || || ||||| Sbjct 35196 ACGTTCTCAATGGTGTCGCTGGATTCCACTTCGAGCGCGATCGTCTTGCCCGTCAGTGTC 35255 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 35256 TTCACAAATATCTGCAT 35272 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || ||| Sbjct 40984 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 41043 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 41044 GCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 41103 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | ||| || || || | || ||||| || || ||||| Sbjct 41104 ACGTTCTCAATGGTGTCGCTGGATTCCACTTCGAGAGCGATCGTCTTGCCCGTCAGTGTC 41163 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 41164 TTCACAAATATCTGCAT 41180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151383205139240