Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq253 131 2e-25 seq764 100 4e-16 >seq253 Length=51549 Score = 131 bits (144), Expect = 2e-25 Identities = 271/396 (68%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 ||||| || |||||||| || |||||||| || ||||| || | | | ||| || || Sbjct 30026 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCG 30085 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33473 |||||||| || ||||| || || |||||||||| ||| | || || ||| | ||| Sbjct 30086 GAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGCT 30144 Query 33474 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 | | |||||| ||||| | |||||| || | | || || || || || Sbjct 30145 GCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAAT 30204 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA--GA 33591 ||| | || | || || || | ||||| | | || ||||| | || | || Sbjct 30205 GGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGA 30264 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||| |||||||||||| ||| |||||||| ||||| || |||||||| || | || Sbjct 30265 GTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 30322 Query 33652 T-CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 | ||||| | |||||||| || || || | ||||| || || ||| ||||| || Sbjct 30323 TCCGGTACT-TGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATC 30381 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 ||| || ||||| ||||||| || || || ||||| Sbjct 30382 ACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAA 30417 >seq764 Length=631131 Score = 100 bits (110), Expect = 4e-16 Identities = 293/450 (65%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 ||||| || ||||| || | |||||| |||| ||| || || |||||||||||||| Sbjct 146322 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGTTCCATGAATAGGTCAGGAATCCAAAG 146263 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 146262 AGCGTAAAACAAATCTCGTGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 146203 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 || | |||||| |||||| || || ||||| ||||| | | || || || Sbjct 146202 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGCTT 146143 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 || || ||||||| || | ||| |||||||| |||| | | ||| || | || Sbjct 146142 TCCACCCCCTTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 146083 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC---ACTGGCACGAATATTACT 63484 |||||||| ||||| || || | || ||||| || || | || ||||| Sbjct 146082 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAG---CGGATATTGTG 146026 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 | | || || || || || |||| || | |||||| | || || || || Sbjct 146025 CACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATC 145966 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 ||| || ||||| || || || || |||| || |||||||| | |||||| | Sbjct 145965 ATAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGG 145906 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGG 63634 | | ||||| ||||| ||||| || || Sbjct 145905 AAAAGGTGTTCCGGCATTGAATAATGTCGG 145876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939179554800