Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq995 95.1 8e-15 seq994 95.1 8e-15 seq993 95.1 8e-15 seq992 95.1 8e-15 seq818 95.1 8e-15 seq817 95.1 8e-15 seq762 95.1 8e-15 seq761 95.1 8e-15 seq614 95.1 8e-15 seq592 95.1 8e-15 >seq995 Length=21786 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 1196 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 1255 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 1256 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 1290 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 15332 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 15391 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 15392 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 15426 >seq994 Length=16576 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 4981 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 5040 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 5041 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 5075 >seq993 Length=17991 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 6100 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 6159 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 6160 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 6194 >seq992 Length=17059 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 13910 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 13851 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 13850 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 13816 >seq818 Length=14441 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 7021 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 6962 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 6961 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 6927 >seq817 Length=18287 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 7273 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 7214 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 7213 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 7179 >seq762 Length=24566 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 1111 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 1170 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 1171 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 1205 >seq761 Length=141961 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 135376 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 135435 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 135436 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 135470 >seq614 Length=15156 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 14365 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 14306 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 14305 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 14271 >seq592 Length=22661 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 2459 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 2518 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 2519 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 2553 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 20140 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 20199 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 20200 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 20234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942995365930