Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq253 134 2e-26 seq764 109 7e-19 >seq253 Length=51549 Score = 134 bits (148), Expect = 2e-26 Identities = 357/533 (67%), Gaps = 12/533 (2%) Strand=Plus/Plus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 32770 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 30026 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCG-CACAGAAGGAGCC 30084 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GC 32829 ||||||||||| ||||| || ||||||||||||| ||| | || || ||| | || Sbjct 30085 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGC 30143 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || | |||||| ||||| | |||||| || | | || || |||||| | Sbjct 30144 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAA 30203 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA--G 32947 | || | || | || || || | ||||| | | || ||||| | || | | Sbjct 30204 TGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCG 30263 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 | ||| |||||||||||| ||| |||||||| || || || ||||||||||| | | Sbjct 30264 AGTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCAC 30321 Query 33008 CT-CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 || ||||| | |||||||| || || || | || | || || ||| ||||| | Sbjct 30322 CTCCGGTACT-TGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCAT 30380 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 33126 |||| || ||||| ||||||| || || || ||||| | || || || | | | Sbjct 30381 CACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCT 30440 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC-C 33185 | | ||| || | || | | ||| | ||| ||||| |||| | ||| ||| | Sbjct 30441 TCTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTC 30499 Query 33186 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 33238 || || | || ||| | |||||||| ||||| || | || ||||| || || Sbjct 30500 TCGGCTTCCTTGTACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCAC 30552 >seq764 Length=631131 Score = 109 bits (120), Expect = 7e-19 Identities = 295/450 (66%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||||| || ||||| || | |||||| |||| ||| || || |||||||||||||| Sbjct 146322 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGTTCCATGAATAGGTCAGGAATCCAAAG 146263 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 146262 AGCGTAAAACAAATCTCGTGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 146203 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 || | |||||| |||||| || || ||||| ||||| | | || || || Sbjct 146202 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGCTT 146143 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 || || ||||||| || | ||| |||||||| |||| | | ||| || | || Sbjct 146142 TCCACCCCCTTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 146083 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC---ACTGGCACGAATATTACT 63339 || || || ||||| ||||| | || ||||| || || | || ||||| Sbjct 146082 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAG---CGGATATTGTG 146026 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 | | || || || || || |||| || | |||||| | || || ||||| Sbjct 146025 CACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATC 145966 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459 ||| || ||||| ||||| || ||| |||| || |||||||| | |||||| | Sbjct 145965 ATAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGG 145906 Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGG 63489 | | ||||| ||||| ||||| || || Sbjct 145905 AAAAGGTGTTCCGGCATTGAATAATGTCGG 145876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633623841988000