Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq253 172 6e-38 seq840 87.8 2e-12 >seq253 Length=51549 Score = 172 bits (190), Expect = 6e-38 Identities = 599/918 (65%), Gaps = 30/918 (3%) Strand=Plus/Plus Query 92789 TCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTT 92848 |||| ||||| |||||||| || || || || || |||||||| ||||||||||| | Sbjct 29667 TCATTACACCTGCCTTTTGGTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCT 29726 Query 92849 CCAAAGATATCGAATTCACTA--GT-GATTGGATTCTTGGCGTTATAAT-ACTTTTCACC 92904 || || ||| | ||| || || || ||| ||||| | ||| || | || | | Sbjct 29727 GCAGTGAGATC-ATTTCCATAAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCT----C 29781 Query 92905 GAT--CAACTCGTACAATAATCT-ATCAGCTACAAATTCTATGTACTGAGACATCAAATC 92961 | | ||| | || | | | ||| || ||||| ||||||||| ||||||||||| Sbjct 29782 GTTGCCAAGTGCCACCAGCAGCCGATCCGCCACAAACTCTATGTACGTCGACATCAAATC 29841 Query 92962 ACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTAC 93021 ||||| || || || || ||||| | | ||| | ||| || ||| || | Sbjct 29842 TGCGTTCATCCCCAGCAGCCGCACAGGGATGGAGTCACAGATGAACTCACGCTCAATGTC 29901 Query 93022 AACGGC--TTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAA 93079 || || | | || | | | ||| || | ||||| | || | || | || Sbjct 29902 CACCGCACTGCAAATAATCTCGCGAATACGCTCCG--TTGGTAGCTTGTTCACAATGTAG 29959 Query 93080 TT---GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCA 93136 || ||||| | |||||||||||| || || || ||||| || || || || | ||| Sbjct 29960 TTTTCGTACAACAGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCA 30019 Query 93137 TTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA 93196 || ||||| || | || || | ||| || || ||||| ||||| || | | | || || Sbjct 30020 TTACTGAACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCA-CAGAA 30078 Query 93197 CTA-CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--A 93253 | || ||||| || ||||||||||| || ||||| || |||| ||||||||||| | Sbjct 30079 GGAGCCGGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGA 30138 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 ||| | |||| |||||| | ||||| | ||| ||||||| || || || Sbjct 30139 ACTGC-----TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGA 30193 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCG 93373 | ||| || |||| || | | || ||| |||| |||| ||||| ||||| Sbjct 30194 ATTGTCGAAATGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCC 30253 Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 | | || || || |||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct 30254 AACAGCACCGAGTATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAG 30313 Query 93434 CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACT 93493 || | | |||| | || ||||| || | || | || || || || Sbjct 30314 CAGCGCACCTCCGGTACTTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACA 30373 Query 93494 ATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT 93553 || ||||| ||| ||||| || |||| | ||||| ||||| ||||| | || Sbjct 30374 ATTCCATCACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCG 30433 Query 93554 TTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 || | ||| ||||| || | | || | | ||||| ||| || || |||| | | Sbjct 30434 TTCATCTTCTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGAT 30492 Query 93614 GATGCT-TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGAC 93672 | |||| || |||| |||||| | | ||| || || || || | || ||||| || || Sbjct 30493 GCTGCTCTCGGCTTCCTTGTACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCAC 30552 Query 93673 AAAACGATTAGGGTTATC 93690 |||| | ||| || || Sbjct 30553 GTAACGGTCAGGATTCTC 30570 >seq840 Length=448061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 61/67 (91%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 ||||||||||||||||||||||||||||| | ||||| || || ||| |||||||||||| Sbjct 362879 TGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCTCTAGGG-GCGTGGGTTCGA 362822 Query 126333 ACCCCAC 126339 ||||||| Sbjct 362821 ACCCCAC 362815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556853630417200