Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq253 199 7e-46 seq764 95.1 2e-14 >seq253 Length=51549 Score = 199 bits (220), Expect = 7e-46 Identities = 572/866 (66%), Gaps = 13/866 (2%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || |||| || |||||| | ||||||| | || || | || |||||| | Sbjct 30541 GATCAAGTACCATGATATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCATCTGGACGGT 30482 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||| || || || || ||| ||| | ||||||| || || || || Sbjct 30481 GGAGGAAATCGATTTGAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAA 30422 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| || |||| || | ||||| ||||| ||||| ||| || || || ||||| Sbjct 30421 GTTCTTTATCAAGCACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAA 30362 Query 42464 CCTGGC-CACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGC 42521 |||||| || | ||||||||| || || || |||| |||| ||||||||||||||| Sbjct 30361 CCTGGCGCAGC-GGTTCATGACGGAAGTACAAGTACCG-GAGGTGCGCTGCTTCTACGGG 30304 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| ||||| |||||||| || || || ||| | ||| | | |||||| Sbjct 30303 TTCCAGATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTAC 30244 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| ||| | | ||| || | |||| | ||||| ||| || || |||||| Sbjct 30243 ATCACAGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACAATTCCGTGCATC 30184 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 |||| ||||| |||||||| | |||||| || | | |||| | ||| Sbjct 30183 CAGAAAAAGGCCAACTGGGCGATTCGGTGGATCCGCAG---CAGCAGTTCGTTTGCCGAA 30127 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | || || |||||| | || || || || || ||||| || ||| ||||| | | Sbjct 30126 CGCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTG 30067 Query 42762 TTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 |||||||| ||| || ||| | ||||||||| || || ||| || ||||||||| Sbjct 30066 TTCTGGCTAAAGAAGCGTGGTCT-GATGCCCGGGCTGACGTTCAGTAATGAACTCATCTC 30008 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 | || || || |||| | ||||||||| ||||| ||| | | | || | | | Sbjct 30007 GCGTGATGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTACGAAAACTACATTGTGAA 29948 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAG-GCCGTGGAGATCGAGAAGG 42939 ||||| | | |||||| | || | || || | || || ||||| || ||| | Sbjct 29947 CAAGCTACCAACGGAGCGTATTCGCGAGATTAT-TTGCAGTGCGGTGGACATTGAGCGTG 29889 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||| || | || | || ||| ||| | || |||||| || | |||| | Sbjct 29888 AGTTCATCTGTGACTCCATCCCTGTGCGGCTGCTGGGGATGAACGCAGATTTGATGTCGA 29829 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||| ||| || || || | || || ||| || ||| || || | |||| Sbjct 29828 CGTACATAGAGTTTGTGGCGGATCGGCTGCTGGTGGCACTTGGCAACGAG-CGTCACTAC 29770 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 ||| | | ||| |||||||||||||| | ||||| || |||| ||||| ||||| Sbjct 29769 AACTCAAAGAACCCATTCGACTTTATGGAAATGATCTCACTGCAGGGAAAGACAAACTTC 29710 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCA 43144 || |||||| |||| || ||||| Sbjct 29709 TTTGAGAAGAAGGTCGGTGAGTACCA 29684 >seq764 Length=631131 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 243998 ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGG 244057 ||||| ||||| ||||| |||| | | |||| ||| ||||||| | ||||||||||| Sbjct 147281 ATGTTTTGCACTGAGCCATTGTAGGCAATGATCTGATTGCGCATCTCTTCGTTCCACAGA 147222 Query 244058 CCCAAGCGCT---CCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGAC 244114 ||| |||| || || || |||| | |||| ||||| ||||||| || | Sbjct 147221 CCC---CGCTTAATGAGATCCATCACAAGGTACTTGTTAACCACAGGAAACTCACCACTC 147165 Query 244115 AGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGT 244174 ||||| |||||| ||||| || | | | ||||| | || ||| |||| || ||| Sbjct 147164 AGCACTCGGCGCACGTAGATATTTGAGGTAAATGGCTCAAAGCACTCATTGTTCCCAAGT 147105 Query 244175 ATCTGCGCCGTGCTCGCAGTCGGCATGGG 244203 ||||||| ||| ||||| ||||| || Sbjct 147104 ATCTGCGAAGTGGATGCAGTGGGCATTGG 147076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944327041632800